Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 AC005586.2-201ENST00000563946 837 ntBASIC19.48■□□□□ 0.71
NPHP3Q7Z494 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP3Q7Z494 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP3Q7Z494 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
NPHP3Q7Z494 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC19.47■□□□□ 0.71
NPHP3Q7Z494 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP3Q7Z494 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
NPHP3Q7Z494 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC19.47■□□□□ 0.71
NPHP3Q7Z494 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC19.47■□□□□ 0.71
NPHP3Q7Z494 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP3Q7Z494 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP3Q7Z494 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC19.47■□□□□ 0.71
NPHP3Q7Z494 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP3Q7Z494 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP3Q7Z494 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP3Q7Z494 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC19.47■□□□□ 0.71
NPHP3Q7Z494 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP3Q7Z494 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC19.47■□□□□ 0.71
NPHP3Q7Z494 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP3Q7Z494 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC19.47■□□□□ 0.71
NPHP3Q7Z494 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP3Q7Z494 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC19.47■□□□□ 0.71
NPHP3Q7Z494 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
NPHP3Q7Z494 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC19.47■□□□□ 0.71
NPHP3Q7Z494 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC19.47■□□□□ 0.71
NPHP3Q7Z494 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC19.47■□□□□ 0.71
NPHP3Q7Z494 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
NPHP3Q7Z494 BCRP4-201ENST00000506079 804 ntBASIC19.47■□□□□ 0.71
NPHP3Q7Z494 IGHEP2-201ENST00000519308 1256 ntBASIC19.47■□□□□ 0.71
NPHP3Q7Z494 AL590235.1-201ENST00000564650 861 ntBASIC19.47■□□□□ 0.71
NPHP3Q7Z494 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP3Q7Z494 AC004686.1-201ENST00000605113 538 ntBASIC19.47■□□□□ 0.71
NPHP3Q7Z494 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC19.47■□□□□ 0.71
NPHP3Q7Z494 HPX-213ENST00000615166 826 ntTSL 5 BASIC19.47■□□□□ 0.71
NPHP3Q7Z494 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
NPHP3Q7Z494 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
NPHP3Q7Z494 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC19.47■□□□□ 0.71
NPHP3Q7Z494 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC19.47■□□□□ 0.71
NPHP3Q7Z494 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 AC007491.1-201ENST00000637560 1306 ntTSL 5 BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 AL365181.1-201ENST00000564032 1828 ntBASIC19.46■□□□□ 0.71
NPHP3Q7Z494 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 MPI-203ENST00000535694 1523 ntTSL 2 BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 UBR5-AS1-202ENST00000520820 800 ntTSL 2 BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 HNRNPA1P5-201ENST00000558213 966 ntBASIC19.46■□□□□ 0.71
NPHP3Q7Z494 RN7SL121P-201ENST00000584223 273 ntBASIC19.46■□□□□ 0.71
NPHP3Q7Z494 AC012617.1-201ENST00000586345 797 ntTSL 2 BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 AC008735.2-201ENST00000589456 549 ntTSL 5 BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 DNAJC10-211ENST00000640034 888 ntTSL 5 BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC19.46■□□□□ 0.71
NPHP3Q7Z494 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC19.45■□□□□ 0.7
NPHP3Q7Z494 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC19.45■□□□□ 0.7
NPHP3Q7Z494 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC19.45■□□□□ 0.7
NPHP3Q7Z494 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC19.45■□□□□ 0.7
NPHP3Q7Z494 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
NPHP3Q7Z494 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
NPHP3Q7Z494 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC19.45■□□□□ 0.7
NPHP3Q7Z494 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
NPHP3Q7Z494 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC19.45■□□□□ 0.7
NPHP3Q7Z494 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NPHP3Q7Z494 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NPHP3Q7Z494 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
NPHP3Q7Z494 CTSL-202ENST00000342020 933 ntTSL 2 BASIC19.45■□□□□ 0.7
NPHP3Q7Z494 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC19.45■□□□□ 0.7
NPHP3Q7Z494 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC19.45■□□□□ 0.7
NPHP3Q7Z494 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC19.45■□□□□ 0.7
NPHP3Q7Z494 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
NPHP3Q7Z494 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms