Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 GGCT-203ENST00000409144 836 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 AL008707.1-201ENST00000422498 534 ntBASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 RN7SL11P-201ENST00000471305 293 ntBASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 AC091544.8-201ENST00000619490 361 ntBASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 AC015802.1-201ENST00000588104 1449 ntBASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 HINT2P1-201ENST00000419438 481 ntBASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 Z97180.1-201ENST00000445173 988 ntBASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC17.02■□□□□ 0.32
CCDC144BQ3MJ40 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC17.02■□□□□ 0.31
CCDC144BQ3MJ40 AP000593.2-201ENST00000542775 1433 ntBASIC17.02■□□□□ 0.31
CCDC144BQ3MJ40 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC17.02■□□□□ 0.31
CCDC144BQ3MJ40 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC144BQ3MJ40 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC17.02■□□□□ 0.31
CCDC144BQ3MJ40 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
CCDC144BQ3MJ40 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC144BQ3MJ40 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC144BQ3MJ40 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC144BQ3MJ40 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC144BQ3MJ40 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC144BQ3MJ40 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC17.01■□□□□ 0.31
CCDC144BQ3MJ40 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC17.01■□□□□ 0.31
CCDC144BQ3MJ40 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
CCDC144BQ3MJ40 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC144BQ3MJ40 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC144BQ3MJ40 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC144BQ3MJ40 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
CCDC144BQ3MJ40 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC17.01■□□□□ 0.31
CCDC144BQ3MJ40 AL360270.3-201ENST00000609118 1348 ntBASIC17.01■□□□□ 0.31
CCDC144BQ3MJ40 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC17.01■□□□□ 0.31
CCDC144BQ3MJ40 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC144BQ3MJ40 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC144BQ3MJ40 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC144BQ3MJ40 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC17.01■□□□□ 0.31
CCDC144BQ3MJ40 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC144BQ3MJ40 ZBTB45P1-201ENST00000452761 1456 ntBASIC17.01■□□□□ 0.31
CCDC144BQ3MJ40 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
CCDC144BQ3MJ40 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
CCDC144BQ3MJ40 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC144BQ3MJ40 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
CCDC144BQ3MJ40 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC144BQ3MJ40 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC144BQ3MJ40 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms