Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
GFRA1P56159 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
GFRA1P56159 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
GFRA1P56159 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC13.09□□□□□ -0.31
GFRA1P56159 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC13.09□□□□□ -0.31
GFRA1P56159 KRT8P21-201ENST00000430398 1491 ntBASIC13.09□□□□□ -0.31
GFRA1P56159 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC13.09□□□□□ -0.31
GFRA1P56159 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
GFRA1P56159 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
GFRA1P56159 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
GFRA1P56159 FES-203ENST00000394302 2133 ntTSL 5 BASIC13.09□□□□□ -0.31
GFRA1P56159 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
GFRA1P56159 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
GFRA1P56159 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
GFRA1P56159 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.31
GFRA1P56159 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC13.08□□□□□ -0.31
GFRA1P56159 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC13.08□□□□□ -0.31
GFRA1P56159 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.31
GFRA1P56159 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
GFRA1P56159 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC13.08□□□□□ -0.32
GFRA1P56159 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
GFRA1P56159 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
GFRA1P56159 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
GFRA1P56159 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
GFRA1P56159 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
GFRA1P56159 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
GFRA1P56159 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
GFRA1P56159 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
GFRA1P56159 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
GFRA1P56159 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
GFRA1P56159 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
GFRA1P56159 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
GFRA1P56159 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC13.08□□□□□ -0.32
GFRA1P56159 ISCA2P1-201ENST00000425548 448 ntBASIC13.08□□□□□ -0.32
GFRA1P56159 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC13.08□□□□□ -0.32
GFRA1P56159 Z97180.1-201ENST00000445173 988 ntBASIC13.08□□□□□ -0.32
GFRA1P56159 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC13.08□□□□□ -0.32
GFRA1P56159 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC13.08□□□□□ -0.32
GFRA1P56159 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC13.08□□□□□ -0.32
GFRA1P56159 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC13.08□□□□□ -0.32
GFRA1P56159 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC13.08□□□□□ -0.32
GFRA1P56159 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
GFRA1P56159 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
GFRA1P56159 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC13.08□□□□□ -0.32
GFRA1P56159 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC13.08□□□□□ -0.32
GFRA1P56159 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC13.08□□□□□ -0.32
GFRA1P56159 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
GFRA1P56159 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC13.08□□□□□ -0.32
GFRA1P56159 AC140479.7-201ENST00000636301 2332 ntBASIC13.08□□□□□ -0.32
GFRA1P56159 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
GFRA1P56159 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
GFRA1P56159 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
GFRA1P56159 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
GFRA1P56159 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC13.08□□□□□ -0.32
GFRA1P56159 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC13.08□□□□□ -0.32
GFRA1P56159 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC13.08□□□□□ -0.32
GFRA1P56159 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC13.08□□□□□ -0.32
GFRA1P56159 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
GFRA1P56159 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC13.08□□□□□ -0.32
GFRA1P56159 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
GFRA1P56159 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
GFRA1P56159 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
GFRA1P56159 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
GFRA1P56159 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
GFRA1P56159 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC13.07□□□□□ -0.32
GFRA1P56159 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
GFRA1P56159 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
GFRA1P56159 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
GFRA1P56159 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC13.07□□□□□ -0.32
GFRA1P56159 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
GFRA1P56159 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
GFRA1P56159 AC099063.4-201ENST00000641099 1602 ntBASIC13.07□□□□□ -0.32
GFRA1P56159 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
GFRA1P56159 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
GFRA1P56159 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
GFRA1P56159 AC239868.1-201ENST00000369385 493 ntBASIC13.07□□□□□ -0.32
GFRA1P56159 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
GFRA1P56159 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
GFRA1P56159 CMC1-204ENST00000423894 549 ntTSL 2 BASIC13.07□□□□□ -0.32
GFRA1P56159 AL161932.2-201ENST00000435436 679 ntBASIC13.07□□□□□ -0.32
GFRA1P56159 MSRA-203ENST00000441698 788 ntTSL 2 BASIC13.07□□□□□ -0.32
GFRA1P56159 AC006335.1-201ENST00000445200 547 ntBASIC13.07□□□□□ -0.32
GFRA1P56159 AC090857.1-201ENST00000527400 390 ntBASIC13.07□□□□□ -0.32
GFRA1P56159 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC13.07□□□□□ -0.32
GFRA1P56159 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC13.07□□□□□ -0.32
GFRA1P56159 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC13.07□□□□□ -0.32
GFRA1P56159 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC13.07□□□□□ -0.32
GFRA1P56159 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC13.07□□□□□ -0.32
GFRA1P56159 MIR3188-201ENST00000583494 85 ntBASIC13.07□□□□□ -0.32
GFRA1P56159 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC13.07□□□□□ -0.32
GFRA1P56159 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC13.07□□□□□ -0.32
GFRA1P56159 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC13.07□□□□□ -0.32
GFRA1P56159 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
GFRA1P56159 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC13.07□□□□□ -0.32
GFRA1P56159 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC13.07□□□□□ -0.32
GFRA1P56159 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC13.07□□□□□ -0.32
GFRA1P56159 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
GFRA1P56159 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
GFRA1P56159 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC13.07□□□□□ -0.32
GFRA1P56159 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 73.3 ms