Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC025186.1-201ENST00000478174 870 ntBASIC19.86■□□□□ 0.77
MSH6P52701 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
MSH6P52701 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
MSH6P52701 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC19.86■□□□□ 0.77
MSH6P52701 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
MSH6P52701 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC19.86■□□□□ 0.77
MSH6P52701 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
MSH6P52701 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
MSH6P52701 PRMT2-216ENST00000621201 1301 ntTSL 5 BASIC19.86■□□□□ 0.77
MSH6P52701 AC112693.3-201ENST00000624819 1983 ntBASIC19.86■□□□□ 0.77
MSH6P52701 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
MSH6P52701 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
MSH6P52701 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
MSH6P52701 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
MSH6P52701 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC19.86■□□□□ 0.77
MSH6P52701 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
MSH6P52701 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC19.86■□□□□ 0.77
MSH6P52701 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
MSH6P52701 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC19.86■□□□□ 0.77
MSH6P52701 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
MSH6P52701 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
MSH6P52701 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSH6P52701 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSH6P52701 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
MSH6P52701 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC19.85■□□□□ 0.77
MSH6P52701 CICP6-201ENST00000457191 2729 ntBASIC19.85■□□□□ 0.77
MSH6P52701 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
MSH6P52701 DYNLT1-201ENST00000367085 774 ntTSL 2 BASIC19.85■□□□□ 0.77
MSH6P52701 TNNT2-207ENST00000367322 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSH6P52701 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
MSH6P52701 PRR23A-201ENST00000383163 801 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
MSH6P52701 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSH6P52701 IFNWP2-201ENST00000431203 580 ntBASIC19.85■□□□□ 0.77
MSH6P52701 HNRNPA1P2-207ENST00000432375 960 ntBASIC19.85■□□□□ 0.77
MSH6P52701 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC19.85■□□□□ 0.77
MSH6P52701 KRT18P62-201ENST00000446618 1287 ntBASIC19.85■□□□□ 0.77
MSH6P52701 PRSS3P1-201ENST00000503996 742 ntBASIC19.85■□□□□ 0.77
MSH6P52701 AC113347.2-201ENST00000512350 279 ntBASIC19.85■□□□□ 0.77
MSH6P52701 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
MSH6P52701 CDIPT-AS1-202ENST00000565014 729 ntTSL 2 BASIC19.85■□□□□ 0.77
MSH6P52701 RN7SL602P-201ENST00000578326 324 ntBASIC19.85■□□□□ 0.77
MSH6P52701 RN7SL718P-201ENST00000581254 303 ntBASIC19.85■□□□□ 0.77
MSH6P52701 MIAT_exon5_3.1-201ENST00000613656 377 ntBASIC19.85■□□□□ 0.77
MSH6P52701 AC005274.1-201ENST00000623460 802 ntBASIC19.85■□□□□ 0.77
MSH6P52701 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC19.85■□□□□ 0.77
MSH6P52701 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
MSH6P52701 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSH6P52701 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
MSH6P52701 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
MSH6P52701 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSH6P52701 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
MSH6P52701 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSH6P52701 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC19.85■□□□□ 0.77
MSH6P52701 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC19.85■□□□□ 0.77
MSH6P52701 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC19.85■□□□□ 0.77
MSH6P52701 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSH6P52701 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSH6P52701 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSH6P52701 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC19.85■□□□□ 0.77
MSH6P52701 AC138761.6-201ENST00000583997 1423 ntBASIC19.85■□□□□ 0.77
MSH6P52701 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSH6P52701 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSH6P52701 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
MSH6P52701 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH6P52701 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
MSH6P52701 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC19.84■□□□□ 0.77
MSH6P52701 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
MSH6P52701 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
MSH6P52701 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH6P52701 MANEA-202ENST00000369293 1076 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
MSH6P52701 AL157823.1-201ENST00000403727 628 ntBASIC19.84■□□□□ 0.77
MSH6P52701 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC19.84■□□□□ 0.77
MSH6P52701 AC092903.1-201ENST00000466506 262 ntBASIC19.84■□□□□ 0.77
MSH6P52701 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC19.84■□□□□ 0.77
MSH6P52701 AC004801.1-201ENST00000549557 360 ntBASIC19.84■□□□□ 0.77
MSH6P52701 AC005777.1-201ENST00000588332 187 ntBASIC19.84■□□□□ 0.77
MSH6P52701 AL009176.1-201ENST00000607876 650 ntBASIC19.84■□□□□ 0.77
MSH6P52701 AC139713.2-207ENST00000641556 1292 ntBASIC19.84■□□□□ 0.77
MSH6P52701 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
MSH6P52701 AC006504.5-208ENST00000588784 2401 ntBASIC19.84■□□□□ 0.77
MSH6P52701 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC19.84■□□□□ 0.77
MSH6P52701 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
MSH6P52701 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
MSH6P52701 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC19.84■□□□□ 0.77
MSH6P52701 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH6P52701 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH6P52701 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH6P52701 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH6P52701 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH6P52701 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH6P52701 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH6P52701 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
MSH6P52701 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC19.84■□□□□ 0.77
MSH6P52701 LAP3P2-201ENST00000454686 1454 ntBASIC19.84■□□□□ 0.77
MSH6P52701 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC19.84■□□□□ 0.77
MSH6P52701 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC19.84■□□□□ 0.77
MSH6P52701 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH6P52701 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH6P52701 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
MSH6P52701 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms