Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RAB37-204ENST00000392613 2617 ntAPPRIS ALT1 TSL 2 BASIC12.29□□□□□ -0.44
HOXA1P49639 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC12.29□□□□□ -0.44
HOXA1P49639 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXA1P49639 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HOXA1P49639 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
HOXA1P49639 MROH2A-208ENST00000610772 5324 ntAPPRIS P2 TSL 5 BASIC12.29□□□□□ -0.44
HOXA1P49639 SLC46A1-208ENST00000618626 5363 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HOXA1P49639 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXA1P49639 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC12.29□□□□□ -0.44
HOXA1P49639 Z97205.2-201ENST00000564697 1639 ntBASIC12.29□□□□□ -0.44
HOXA1P49639 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXA1P49639 TRPA1-201ENST00000262209 5223 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXA1P49639 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HOXA1P49639 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXA1P49639 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HOXA1P49639 EWSAT1-201ENST00000415504 2214 ntTSL 2 BASIC12.29□□□□□ -0.44
HOXA1P49639 CTDP1-202ENST00000299543 3380 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
HOXA1P49639 GPR107-208ENST00000610997 2813 ntTSL 5 BASIC12.29□□□□□ -0.44
HOXA1P49639 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXA1P49639 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
HOXA1P49639 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
HOXA1P49639 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HOXA1P49639 RBM15-205ENST00000618772 3431 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HOXA1P49639 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC12.28□□□□□ -0.44
HOXA1P49639 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
HOXA1P49639 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
HOXA1P49639 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
HOXA1P49639 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HOXA1P49639 AC010536.1-201ENST00000538868 2611 ntBASIC12.28□□□□□ -0.44
HOXA1P49639 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HOXA1P49639 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
HOXA1P49639 CYP2AB1P-202ENST00000454440 1456 ntBASIC12.28□□□□□ -0.44
HOXA1P49639 AC138969.3-201ENST00000546612 1459 ntBASIC12.28□□□□□ -0.44
HOXA1P49639 AC138932.2-201ENST00000548268 1459 ntBASIC12.28□□□□□ -0.44
HOXA1P49639 AC126755.4-201ENST00000549796 1459 ntBASIC12.28□□□□□ -0.44
HOXA1P49639 PTPRK-204ENST00000368210 5025 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
HOXA1P49639 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HOXA1P49639 LILRB3-201ENST00000245620 2066 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
HOXA1P49639 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC12.28□□□□□ -0.44
HOXA1P49639 AC004899.2-201ENST00000622993 3860 ntBASIC12.28□□□□□ -0.44
HOXA1P49639 TROVE2-208ENST00000432079 7848 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HOXA1P49639 PERM1-202ENST00000433179 3340 ntAPPRIS P2 TSL 5 BASIC12.28□□□□□ -0.44
HOXA1P49639 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC12.28□□□□□ -0.44
HOXA1P49639 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HOXA1P49639 AL121723.1-201ENST00000445194 1519 ntBASIC12.28□□□□□ -0.44
HOXA1P49639 PRR12-201ENST00000418929 6955 ntAPPRIS P2 TSL 5 BASIC12.28□□□□□ -0.44
HOXA1P49639 SLC9A7P1-202ENST00000556476 2239 ntBASIC12.28□□□□□ -0.44
HOXA1P49639 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HOXA1P49639 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HOXA1P49639 AL022342.1-201ENST00000400363 863 ntBASIC12.28□□□□□ -0.44
HOXA1P49639 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC12.28□□□□□ -0.44
HOXA1P49639 GPS2P2-201ENST00000430745 888 ntBASIC12.28□□□□□ -0.44
HOXA1P49639 AC023141.5-201ENST00000458585 616 ntBASIC12.28□□□□□ -0.44
HOXA1P49639 TMEM198B-204ENST00000484016 896 ntBASIC12.28□□□□□ -0.44
HOXA1P49639 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC12.28□□□□□ -0.44
HOXA1P49639 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC12.28□□□□□ -0.44
HOXA1P49639 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HOXA1P49639 AC093520.2-201ENST00000561830 333 ntBASIC12.28□□□□□ -0.44
HOXA1P49639 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC12.28□□□□□ -0.44
HOXA1P49639 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC12.28□□□□□ -0.44
HOXA1P49639 AC025048.3-201ENST00000590609 569 ntBASIC12.28□□□□□ -0.44
HOXA1P49639 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC12.28□□□□□ -0.44
HOXA1P49639 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HOXA1P49639 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC12.28□□□□□ -0.44
HOXA1P49639 AC005702.4-201ENST00000618393 416 ntBASIC12.28□□□□□ -0.44
HOXA1P49639 AC009093.7-201ENST00000623853 1223 ntBASIC12.28□□□□□ -0.44
HOXA1P49639 RAB34-224ENST00000636513 888 ntTSL 5 BASIC12.28□□□□□ -0.44
HOXA1P49639 AL033527.5-202ENST00000641632 1098 ntBASIC12.28□□□□□ -0.44
HOXA1P49639 AL645728.2-202ENST00000641679 227 ntBASIC12.28□□□□□ -0.44
HOXA1P49639 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HOXA1P49639 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
HOXA1P49639 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HOXA1P49639 GRAMD4P3-201ENST00000621665 1669 ntBASIC12.28□□□□□ -0.44
HOXA1P49639 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC12.28□□□□□ -0.44
HOXA1P49639 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HOXA1P49639 CSF3R-201ENST00000331941 2375 ntTSL 5 BASIC12.28□□□□□ -0.44
HOXA1P49639 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HOXA1P49639 CTCFL-218ENST00000608440 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
HOXA1P49639 DUOX2-201ENST00000389039 6533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
HOXA1P49639 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
HOXA1P49639 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HOXA1P49639 SPG11-202ENST00000427534 6935 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
HOXA1P49639 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC12.28□□□□□ -0.44
HOXA1P49639 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HOXA1P49639 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HOXA1P49639 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
HOXA1P49639 SUCO-202ENST00000367723 5916 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
HOXA1P49639 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
HOXA1P49639 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.44
HOXA1P49639 RHOH-217ENST00000610353 2268 ntAPPRIS P1 TSL 4 BASIC12.27□□□□□ -0.44
HOXA1P49639 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
HOXA1P49639 KCNMA1-232ENST00000638306 3811 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.44
HOXA1P49639 RBM10-206ENST00000628161 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
HOXA1P49639 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC12.27□□□□□ -0.44
HOXA1P49639 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
HOXA1P49639 TP73-211ENST00000604074 4806 ntTSL 5 BASIC12.27□□□□□ -0.44
HOXA1P49639 GPA33-201ENST00000367868 2802 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
HOXA1P49639 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
HOXA1P49639 CICP1-201ENST00000416803 2410 ntBASIC12.27□□□□□ -0.44
HOXA1P49639 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms