Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ZBTB12BP-201ENST00000314232 1122 ntBASIC13.89□□□□□ -0.19
RFX3P48380 TPM3P8-201ENST00000330554 643 ntBASIC13.89□□□□□ -0.19
RFX3P48380 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC13.89□□□□□ -0.19
RFX3P48380 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC13.89□□□□□ -0.19
RFX3P48380 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC13.89□□□□□ -0.19
RFX3P48380 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC13.89□□□□□ -0.19
RFX3P48380 AC007969.1-201ENST00000433675 447 ntBASIC13.89□□□□□ -0.19
RFX3P48380 AL590640.2-201ENST00000457038 527 ntBASIC13.89□□□□□ -0.19
RFX3P48380 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC13.89□□□□□ -0.19
RFX3P48380 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 AC233724.13-201ENST00000598383 410 ntBASIC13.89□□□□□ -0.19
RFX3P48380 ECM1P1-201ENST00000604092 1279 ntBASIC13.89□□□□□ -0.19
RFX3P48380 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC13.89□□□□□ -0.19
RFX3P48380 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 GAS6-AS1-201ENST00000458001 7169 ntTSL 5 BASIC13.89□□□□□ -0.19
RFX3P48380 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC13.89□□□□□ -0.19
RFX3P48380 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC13.89□□□□□ -0.19
RFX3P48380 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
RFX3P48380 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC13.89□□□□□ -0.19
RFX3P48380 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 FLNA-201ENST00000344736 7932 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
RFX3P48380 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
RFX3P48380 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC13.88□□□□□ -0.19
RFX3P48380 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RFX3P48380 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
RFX3P48380 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC13.88□□□□□ -0.19
RFX3P48380 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC13.88□□□□□ -0.19
RFX3P48380 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RFX3P48380 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC13.88□□□□□ -0.19
RFX3P48380 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RFX3P48380 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RFX3P48380 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC13.88□□□□□ -0.19
RFX3P48380 FLT4-201ENST00000261937 5857 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RFX3P48380 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RFX3P48380 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
RFX3P48380 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RFX3P48380 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
RFX3P48380 PNKD-204ENST00000436005 978 ntTSL 5 BASIC13.88□□□□□ -0.19
RFX3P48380 AC245100.3-201ENST00000441281 285 ntBASIC13.88□□□□□ -0.19
RFX3P48380 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC13.88□□□□□ -0.19
RFX3P48380 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC13.88□□□□□ -0.19
RFX3P48380 USP32P1-208ENST00000506594 1164 ntBASIC13.88□□□□□ -0.19
RFX3P48380 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC13.88□□□□□ -0.19
RFX3P48380 FUZ-207ENST00000526575 482 ntTSL 4 BASIC13.88□□□□□ -0.19
RFX3P48380 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC13.88□□□□□ -0.19
RFX3P48380 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC13.88□□□□□ -0.19
RFX3P48380 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
RFX3P48380 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RFX3P48380 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
RFX3P48380 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC13.88□□□□□ -0.19
RFX3P48380 KSR1-204ENST00000398988 7237 ntAPPRIS P2 TSL 5 BASIC13.88□□□□□ -0.19
RFX3P48380 ABCC6-201ENST00000205557 5747 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RFX3P48380 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
RFX3P48380 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RFX3P48380 MYLK-202ENST00000354792 7531 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
RFX3P48380 SCARB2-215ENST00000639145 4471 ntAPPRIS ALT1 TSL 5 BASIC13.88□□□□□ -0.19
RFX3P48380 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RFX3P48380 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RFX3P48380 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
RFX3P48380 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
RFX3P48380 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RFX3P48380 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RFX3P48380 TRAF3-208ENST00000560371 7640 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RFX3P48380 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RFX3P48380 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RFX3P48380 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC13.87□□□□□ -0.19
RFX3P48380 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RFX3P48380 ADAM12-202ENST00000368679 7938 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
RFX3P48380 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RFX3P48380 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
RFX3P48380 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC13.87□□□□□ -0.19
RFX3P48380 NEU3-201ENST00000294064 6728 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RFX3P48380 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RFX3P48380 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
RFX3P48380 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
RFX3P48380 NR3C2-209ENST00000625323 5909 ntTSL 5 BASIC13.87□□□□□ -0.19
RFX3P48380 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC13.87□□□□□ -0.19
RFX3P48380 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
RFX3P48380 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
RFX3P48380 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RFX3P48380 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
RFX3P48380 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RFX3P48380 TP73-213ENST00000604479 1623 ntTSL 5 BASIC13.87□□□□□ -0.19
RFX3P48380 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC13.87□□□□□ -0.19
RFX3P48380 MAP3K4-203ENST00000366920 5445 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
RFX3P48380 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
RFX3P48380 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms