Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SMARCA1P28370 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SMARCA1P28370 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC16.69■□□□□ 0.26
SMARCA1P28370 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC16.69■□□□□ 0.26
SMARCA1P28370 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SMARCA1P28370 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SMARCA1P28370 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SMARCA1P28370 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SMARCA1P28370 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
SMARCA1P28370 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SMARCA1P28370 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SMARCA1P28370 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SMARCA1P28370 AC067930.6-201ENST00000623257 4947 ntBASIC16.69■□□□□ 0.26
SMARCA1P28370 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SMARCA1P28370 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SMARCA1P28370 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SMARCA1P28370 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
SMARCA1P28370 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SMARCA1P28370 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC16.68■□□□□ 0.26
SMARCA1P28370 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SMARCA1P28370 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
SMARCA1P28370 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
SMARCA1P28370 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC16.68■□□□□ 0.26
SMARCA1P28370 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC16.68■□□□□ 0.26
SMARCA1P28370 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SMARCA1P28370 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
SMARCA1P28370 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SMARCA1P28370 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
SMARCA1P28370 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SMARCA1P28370 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SMARCA1P28370 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SMARCA1P28370 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
SMARCA1P28370 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC16.68■□□□□ 0.26
SMARCA1P28370 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC16.68■□□□□ 0.26
SMARCA1P28370 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC16.68■□□□□ 0.26
SMARCA1P28370 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC16.68■□□□□ 0.26
SMARCA1P28370 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC16.68■□□□□ 0.26
SMARCA1P28370 ACTG1P17-201ENST00000558391 1119 ntBASIC16.68■□□□□ 0.26
SMARCA1P28370 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC16.68■□□□□ 0.26
SMARCA1P28370 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC16.68■□□□□ 0.26
SMARCA1P28370 KLK3-207ENST00000595952 969 ntTSL 3 BASIC16.68■□□□□ 0.26
SMARCA1P28370 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SMARCA1P28370 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC16.68■□□□□ 0.26
SMARCA1P28370 AC091544.8-201ENST00000619490 361 ntBASIC16.68■□□□□ 0.26
SMARCA1P28370 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
SMARCA1P28370 AL133338.1-201ENST00000565695 1517 ntBASIC16.68■□□□□ 0.26
SMARCA1P28370 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC16.68■□□□□ 0.26
SMARCA1P28370 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SMARCA1P28370 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SMARCA1P28370 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SMARCA1P28370 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC16.68■□□□□ 0.26
SMARCA1P28370 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
SMARCA1P28370 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC16.68■□□□□ 0.26
SMARCA1P28370 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
SMARCA1P28370 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SMARCA1P28370 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC16.68■□□□□ 0.26
SMARCA1P28370 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
SMARCA1P28370 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC16.68■□□□□ 0.26
SMARCA1P28370 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SMARCA1P28370 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC16.67■□□□□ 0.26
SMARCA1P28370 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC16.67■□□□□ 0.26
SMARCA1P28370 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
SMARCA1P28370 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC16.67■□□□□ 0.26
SMARCA1P28370 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC16.67■□□□□ 0.26
SMARCA1P28370 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SMARCA1P28370 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SMARCA1P28370 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.67■□□□□ 0.26
SMARCA1P28370 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SMARCA1P28370 LINC01165-201ENST00000445190 1623 ntBASIC16.67■□□□□ 0.26
SMARCA1P28370 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC16.67■□□□□ 0.26
SMARCA1P28370 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC16.67■□□□□ 0.26
SMARCA1P28370 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC16.67■□□□□ 0.26
SMARCA1P28370 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SMARCA1P28370 CCT8L1P-201ENST00000465400 1674 ntBASIC16.67■□□□□ 0.26
SMARCA1P28370 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SMARCA1P28370 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
SMARCA1P28370 NCR3-202ENST00000376071 541 ntTSL 5 BASIC16.67■□□□□ 0.26
SMARCA1P28370 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SMARCA1P28370 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SMARCA1P28370 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SMARCA1P28370 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC16.67■□□□□ 0.26
SMARCA1P28370 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC16.67■□□□□ 0.26
SMARCA1P28370 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC16.67■□□□□ 0.26
SMARCA1P28370 HPN-206ENST00000597419 1212 ntTSL 5 BASIC16.67■□□□□ 0.26
SMARCA1P28370 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC16.67■□□□□ 0.26
SMARCA1P28370 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC16.67■□□□□ 0.26
SMARCA1P28370 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC16.67■□□□□ 0.26
SMARCA1P28370 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC16.67■□□□□ 0.26
SMARCA1P28370 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC16.67■□□□□ 0.26
SMARCA1P28370 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SMARCA1P28370 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC16.67■□□□□ 0.26
SMARCA1P28370 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SMARCA1P28370 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SMARCA1P28370 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.67■□□□□ 0.26
SMARCA1P28370 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SMARCA1P28370 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
SMARCA1P28370 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SMARCA1P28370 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
SMARCA1P28370 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC16.67■□□□□ 0.26
SMARCA1P28370 AC152010.1-201ENST00000415779 2006 ntBASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms