Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 CICP1-201ENST00000416803 2410 ntBASIC11.1□□□□□ -0.63
HLA-DQA1P01909 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 AC009474.1-201ENST00000455096 1565 ntBASIC11.1□□□□□ -0.63
HLA-DQA1P01909 GNPDA1-204ENST00000503794 2622 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 VENTXP1-201ENST00000569334 2716 ntBASIC11.1□□□□□ -0.63
HLA-DQA1P01909 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 SMPDL3B-202ENST00000373894 1878 ntAPPRIS P4 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 PRR29-202ENST00000412177 3127 ntAPPRIS P3 TSL 2 BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 GREB1-206ENST00000396123 5296 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 TMEM229B-207ENST00000557006 3941 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 SLC6A2-201ENST00000219833 2858 ntTSL 5 BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 NUB1-201ENST00000413040 3180 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 DGCR2-201ENST00000263196 4480 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 CLPX-201ENST00000300107 4695 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 SFMBT2-204ENST00000397167 8024 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 ING4-201ENST00000341550 1709 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 KIF12-201ENST00000374118 2001 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 KIAA0930-201ENST00000251993 2723 ntTSL 2 BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 PIK3R6-204ENST00000619866 3041 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 FNIP1-205ENST00000615660 6589 ntTSL 5 BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 TCF12-201ENST00000267811 6061 ntAPPRIS ALT1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 GPHN-203ENST00000478722 4297 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 TWSG1-201ENST00000262120 3756 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 CYTH1-215ENST00000591455 3286 ntAPPRIS P3 TSL 2 BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 ITGB2-201ENST00000302347 2955 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 MTSS1-201ENST00000325064 2777 ntTSL 2 BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 EXOC3-201ENST00000315013 2682 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 CCND3-215ENST00000511642 2394 ntTSL 2 BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 ST5-256ENST00000534127 4545 ntAPPRIS P4 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 CACNA1G-226ENST00000513689 6879 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 CACNA1G-228ENST00000514079 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 CACNA1G-231ENST00000515165 6870 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 CMC4-201ENST00000369479 864 ntAPPRIS P1 TSL 3 BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 NME4-207ENST00000450036 985 ntTSL 3 BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 KRT19P2-202ENST00000557173 1012 ntBASIC11.09□□□□□ -0.63
HLA-DQA1P01909 AC068137.2-201ENST00000605408 478 ntBASIC11.09□□□□□ -0.63
HLA-DQA1P01909 AC025181.2-201ENST00000606994 802 ntBASIC11.09□□□□□ -0.63
HLA-DQA1P01909 MED16-214ENST00000617672 554 ntTSL 5 BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 AQP6-205ENST00000618286 829 ntTSL 5 BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 MED16-202ENST00000312090 3229 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 SEC24B-201ENST00000265175 5083 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 NCSTN-201ENST00000294785 2936 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 FBN1-201ENST00000316623 11756 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 SCARB2-215ENST00000639145 4471 ntAPPRIS ALT1 TSL 5 BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 C21orf59-203ENST00000382549 2503 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 TMEM168-201ENST00000312814 7470 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 ADAMTSL1-205ENST00000380548 8030 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 SLC5A5-201ENST00000222248 3576 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 PES1-204ENST00000402284 2144 ntTSL 5 BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 CD22-209ENST00000594250 2107 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 PLXNB1-201ENST00000296440 7143 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 SERPINI1-201ENST00000295777 1907 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 STXBP6-202ENST00000396700 4021 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 SPTBN2-210ENST00000611817 2890 ntTSL 2 BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 ZBTB42-201ENST00000342537 3800 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 TRPM5-202ENST00000528453 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 TRMT2B-206ENST00000545398 3106 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC11.09□□□□□ -0.63
HLA-DQA1P01909 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 AC015921.1-201ENST00000574885 2546 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 CCDC88C-204ENST00000389857 7474 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 ARHGEF10L-202ENST00000361221 4488 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms