Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC188H7C350 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC15.28■□□□□ 0.04
CCDC188H7C350 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC15.28■□□□□ 0.04
CCDC188H7C350 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC15.28■□□□□ 0.04
CCDC188H7C350 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC188H7C350 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC188H7C350 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC188H7C350 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC188H7C350 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC15.28■□□□□ 0.04
CCDC188H7C350 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC15.28■□□□□ 0.04
CCDC188H7C350 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC188H7C350 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC188H7C350 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC188H7C350 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC188H7C350 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC188H7C350 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC188H7C350 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC188H7C350 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
CCDC188H7C350 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC188H7C350 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC188H7C350 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC15.28■□□□□ 0.04
CCDC188H7C350 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
CCDC188H7C350 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC188H7C350 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC188H7C350 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC188H7C350 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC188H7C350 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC188H7C350 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
CCDC188H7C350 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
CCDC188H7C350 APOA1-205ENST00000375329 927 ntTSL 2 BASIC15.28■□□□□ 0.04
CCDC188H7C350 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
CCDC188H7C350 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC188H7C350 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
CCDC188H7C350 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC15.28■□□□□ 0.04
CCDC188H7C350 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC15.28■□□□□ 0.04
CCDC188H7C350 FO681548.1-201ENST00000455617 1132 ntBASIC15.28■□□□□ 0.04
CCDC188H7C350 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC15.28■□□□□ 0.04
CCDC188H7C350 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC15.28■□□□□ 0.04
CCDC188H7C350 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC15.28■□□□□ 0.04
CCDC188H7C350 KRT18P8-201ENST00000581937 1246 ntBASIC15.28■□□□□ 0.04
CCDC188H7C350 AC004466.1-201ENST00000599515 1080 ntBASIC15.28■□□□□ 0.04
CCDC188H7C350 AC138696.2-201ENST00000607376 223 ntBASIC15.28■□□□□ 0.04
CCDC188H7C350 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC15.28■□□□□ 0.04
CCDC188H7C350 AC134684.3-201ENST00000641758 218 ntBASIC15.28■□□□□ 0.04
CCDC188H7C350 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC15.28■□□□□ 0.04
CCDC188H7C350 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC188H7C350 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC188H7C350 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CCDC188H7C350 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC15.28■□□□□ 0.04
CCDC188H7C350 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC188H7C350 AL031595.1-201ENST00000623969 4709 ntBASIC15.28■□□□□ 0.04
CCDC188H7C350 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC188H7C350 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC15.28■□□□□ 0.04
CCDC188H7C350 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
CCDC188H7C350 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC188H7C350 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
CCDC188H7C350 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC188H7C350 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC188H7C350 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC15.28■□□□□ 0.04
CCDC188H7C350 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC188H7C350 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC15.28■□□□□ 0.04
CCDC188H7C350 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC15.28■□□□□ 0.04
CCDC188H7C350 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
CCDC188H7C350 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC188H7C350 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC188H7C350 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC15.28■□□□□ 0.04
CCDC188H7C350 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC188H7C350 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC15.28■□□□□ 0.04
CCDC188H7C350 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC188H7C350 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC188H7C350 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
CCDC188H7C350 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC188H7C350 F10-203ENST00000409306 1450 ntTSL 3 BASIC15.27■□□□□ 0.04
CCDC188H7C350 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
CCDC188H7C350 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
CCDC188H7C350 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
CCDC188H7C350 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC188H7C350 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC188H7C350 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC188H7C350 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC188H7C350 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC188H7C350 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC15.27■□□□□ 0.04
CCDC188H7C350 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC188H7C350 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC15.27■□□□□ 0.04
CCDC188H7C350 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC188H7C350 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC15.27■□□□□ 0.04
CCDC188H7C350 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC188H7C350 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC188H7C350 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC188H7C350 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC188H7C350 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC188H7C350 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC15.27■□□□□ 0.04
CCDC188H7C350 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC188H7C350 AL442647.2-201ENST00000429864 857 ntBASIC15.27■□□□□ 0.04
CCDC188H7C350 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC188H7C350 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC188H7C350 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC15.27■□□□□ 0.04
CCDC188H7C350 ALG3P1-201ENST00000508806 1114 ntBASIC15.27■□□□□ 0.04
CCDC188H7C350 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC15.27■□□□□ 0.04
CCDC188H7C350 STOM-203ENST00000538954 1257 ntTSL 5 BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms