Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
LRFN1Q9P244 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC13.5□□□□□ -0.25
LRFN1Q9P244 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC13.5□□□□□ -0.25
LRFN1Q9P244 AC091812.3-201ENST00000621362 345 ntBASIC13.5□□□□□ -0.25
LRFN1Q9P244 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC13.5□□□□□ -0.25
LRFN1Q9P244 RETN-203ENST00000629642 400 ntTSL 5 BASIC13.5□□□□□ -0.25
LRFN1Q9P244 NAP1L6-202ENST00000641404 1222 ntBASIC13.5□□□□□ -0.25
LRFN1Q9P244 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LRFN1Q9P244 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
LRFN1Q9P244 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LRFN1Q9P244 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC13.5□□□□□ -0.25
LRFN1Q9P244 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
LRFN1Q9P244 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC13.5□□□□□ -0.25
LRFN1Q9P244 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
LRFN1Q9P244 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC13.5□□□□□ -0.25
LRFN1Q9P244 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LRFN1Q9P244 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
LRFN1Q9P244 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
LRFN1Q9P244 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
LRFN1Q9P244 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
LRFN1Q9P244 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC13.5□□□□□ -0.25
LRFN1Q9P244 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC13.5□□□□□ -0.25
LRFN1Q9P244 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LRFN1Q9P244 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
LRFN1Q9P244 AC136759.1-202ENST00000530858 2194 ntBASIC13.49□□□□□ -0.25
LRFN1Q9P244 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC13.49□□□□□ -0.25
LRFN1Q9P244 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
LRFN1Q9P244 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
LRFN1Q9P244 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LRFN1Q9P244 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LRFN1Q9P244 AC023157.3-201ENST00000619086 2088 ntBASIC13.49□□□□□ -0.25
LRFN1Q9P244 F10-203ENST00000409306 1450 ntTSL 3 BASIC13.49□□□□□ -0.25
LRFN1Q9P244 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
LRFN1Q9P244 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
LRFN1Q9P244 AC067750.1-201ENST00000608826 6545 ntBASIC13.49□□□□□ -0.25
LRFN1Q9P244 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LRFN1Q9P244 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LRFN1Q9P244 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
LRFN1Q9P244 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LRFN1Q9P244 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LRFN1Q9P244 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC13.49□□□□□ -0.25
LRFN1Q9P244 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LRFN1Q9P244 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC13.49□□□□□ -0.25
LRFN1Q9P244 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LRFN1Q9P244 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LRFN1Q9P244 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LRFN1Q9P244 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LRFN1Q9P244 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC13.49□□□□□ -0.25
LRFN1Q9P244 HNRNPA1P41-201ENST00000397777 928 ntBASIC13.49□□□□□ -0.25
LRFN1Q9P244 ACTG1P2-201ENST00000415776 1125 ntBASIC13.49□□□□□ -0.25
LRFN1Q9P244 ACTG1P11-201ENST00000425411 1125 ntBASIC13.49□□□□□ -0.25
LRFN1Q9P244 PTPA-215ENST00000432124 567 ntTSL 4 BASIC13.49□□□□□ -0.25
LRFN1Q9P244 MSRA-203ENST00000441698 788 ntTSL 2 BASIC13.49□□□□□ -0.25
LRFN1Q9P244 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LRFN1Q9P244 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC13.49□□□□□ -0.25
LRFN1Q9P244 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC13.49□□□□□ -0.25
LRFN1Q9P244 AC090857.1-201ENST00000527400 390 ntBASIC13.49□□□□□ -0.25
LRFN1Q9P244 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC13.49□□□□□ -0.25
LRFN1Q9P244 AC009779.1-201ENST00000551138 283 ntBASIC13.49□□□□□ -0.25
LRFN1Q9P244 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC13.49□□□□□ -0.25
LRFN1Q9P244 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC13.49□□□□□ -0.25
LRFN1Q9P244 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
LRFN1Q9P244 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC13.49□□□□□ -0.25
LRFN1Q9P244 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC13.49□□□□□ -0.25
LRFN1Q9P244 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
LRFN1Q9P244 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LRFN1Q9P244 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LRFN1Q9P244 AMT-204ENST00000427987 1646 ntTSL 5 BASIC13.49□□□□□ -0.25
LRFN1Q9P244 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LRFN1Q9P244 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LRFN1Q9P244 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
LRFN1Q9P244 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
LRFN1Q9P244 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC13.49□□□□□ -0.25
LRFN1Q9P244 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC13.49□□□□□ -0.25
LRFN1Q9P244 ST20-AS1-201ENST00000560255 4223 ntBASIC13.49□□□□□ -0.25
LRFN1Q9P244 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC13.49□□□□□ -0.25
LRFN1Q9P244 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LRFN1Q9P244 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
LRFN1Q9P244 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC13.49□□□□□ -0.25
LRFN1Q9P244 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC13.49□□□□□ -0.25
LRFN1Q9P244 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LRFN1Q9P244 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LRFN1Q9P244 ABR-205ENST00000544583 5595 ntTSL 2 BASIC13.48□□□□□ -0.25
LRFN1Q9P244 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LRFN1Q9P244 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LRFN1Q9P244 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
LRFN1Q9P244 AC008132.1-202ENST00000342005 1389 ntBASIC13.48□□□□□ -0.25
LRFN1Q9P244 FAM90A7P-201ENST00000382628 1395 ntBASIC13.48□□□□□ -0.25
LRFN1Q9P244 FAM90A23P-201ENST00000400136 1395 ntBASIC13.48□□□□□ -0.25
LRFN1Q9P244 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LRFN1Q9P244 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC13.48□□□□□ -0.25
LRFN1Q9P244 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
LRFN1Q9P244 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LRFN1Q9P244 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LRFN1Q9P244 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
LRFN1Q9P244 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LRFN1Q9P244 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LRFN1Q9P244 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LRFN1Q9P244 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LRFN1Q9P244 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms