Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 HLA-J-203ENST00000494367 1087 ntBASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 LY6E-204ENST00000519546 971 ntTSL 2 BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 5S_rRNA.22-201ENST00000614916 106 ntBASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 AC079781.4-201ENST00000641908 219 ntBASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 AL157414.3-201ENST00000624276 1954 ntBASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 AC087499.5-201ENST00000452760 1342 ntBASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 C5AR2-201ENST00000595464 6746 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 AC018665.1-201ENST00000622927 1362 ntBASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 USP24-201ENST00000294383 10549 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 AC105206.1-202ENST00000314927 2368 ntBASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 CACNA1G-207ENST00000429973 7120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 CACNA1G-217ENST00000507336 7116 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 ADAMTSL2-201ENST00000354484 4068 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 TNC-212ENST00000542877 5517 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 IRF2BPL-201ENST00000238647 4157 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 YWHAZ-206ENST00000395957 5248 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 SLBP-205ENST00000488267 987 ntTSL 2 BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 AC140878.1-201ENST00000565277 250 ntBASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 SPOUT1-201ENST00000361256 4286 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 AC141928.1-201ENST00000511928 4525 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 CIC-204ENST00000572681 8218 ntTSL 5 BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 SLC4A1-201ENST00000262418 4965 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 CCDC117-205ENST00000448492 3937 ntTSL 2 BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 EPB41L5-205ENST00000452780 6410 ntTSL 5 BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC12.76□□□□□ -0.37
CHMP1AQ9HD42 GRIA4-201ENST00000282499 5508 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 RAB6B-201ENST00000285208 5526 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 ADCY7-201ENST00000254235 6138 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms