Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 OS9-207ENST00000439210 1946 ntTSL 2 BASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 AL353637.1-201ENST00000451571 732 ntBASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 AC234782.1-201ENST00000451950 919 ntBASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 RCC2P8-201ENST00000502779 1035 ntBASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 PARP8-206ENST00000503665 572 ntTSL 4 BASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 AC116345.2-201ENST00000512837 523 ntBASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 SNORD3B-2-202ENST00000571722 791 ntBASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 AL133499.1-201ENST00000596207 608 ntBASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 AC092135.3-201ENST00000624151 1846 ntBASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 AL157791.1-201ENST00000553667 1699 ntBASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 MVK-214ENST00000629016 1591 ntTSL 5 BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 C1R-201ENST00000535233 2211 ntTSL 2 BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 EEF1DP6-201ENST00000449232 372 ntBASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 RPL18P13-201ENST00000478088 569 ntBASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 CENPX-208ENST00000584347 799 ntTSL 2 BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 SNX1-214ENST00000625244 324 ntTSL 5 BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RPAP1Q9BWH6 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RPAP1Q9BWH6 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
RPAP1Q9BWH6 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC17.71■□□□□ 0.43
RPAP1Q9BWH6 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC17.71■□□□□ 0.43
RPAP1Q9BWH6 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
RPAP1Q9BWH6 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
RPAP1Q9BWH6 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
RPAP1Q9BWH6 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC17.71■□□□□ 0.43
RPAP1Q9BWH6 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RPAP1Q9BWH6 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
RPAP1Q9BWH6 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC17.71■□□□□ 0.43
RPAP1Q9BWH6 AC012441.2-201ENST00000444843 739 ntBASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms