Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
CCDC3Q9BQI4 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
CCDC3Q9BQI4 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC3Q9BQI4 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC3Q9BQI4 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC3Q9BQI4 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC3Q9BQI4 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC14.35□□□□□ -0.11
CCDC3Q9BQI4 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC3Q9BQI4 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
CCDC3Q9BQI4 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
CCDC3Q9BQI4 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
CCDC3Q9BQI4 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC3Q9BQI4 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC14.35□□□□□ -0.11
CCDC3Q9BQI4 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC3Q9BQI4 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC14.35□□□□□ -0.11
CCDC3Q9BQI4 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC14.35□□□□□ -0.11
CCDC3Q9BQI4 MBLAC2-202ENST00000514906 1936 ntBASIC14.35□□□□□ -0.11
CCDC3Q9BQI4 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC3Q9BQI4 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC3Q9BQI4 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC3Q9BQI4 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 MVK-214ENST00000629016 1591 ntTSL 5 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 MIR33B-201ENST00000385104 96 ntBASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 AL353637.1-201ENST00000451571 732 ntBASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 RPS2P36-201ENST00000456516 831 ntBASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 AC005962.1-201ENST00000584100 773 ntBASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 AC009884.2-201ENST00000603110 324 ntBASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 AP000346.4-201ENST00000614827 381 ntBASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 AL353770.1-201ENST00000614915 403 ntBASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 AC023090.2-201ENST00000625182 2110 ntBASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 RPL35-206ENST00000629845 340 ntTSL 5 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 IKZF1-204ENST00000349824 5757 ntTSL 5 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CCDC3Q9BQI4 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CCDC3Q9BQI4 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC14.33□□□□□ -0.11
CCDC3Q9BQI4 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CCDC3Q9BQI4 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CCDC3Q9BQI4 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC14.33□□□□□ -0.11
CCDC3Q9BQI4 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CCDC3Q9BQI4 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CCDC3Q9BQI4 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC3Q9BQI4 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
CCDC3Q9BQI4 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC3Q9BQI4 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC3Q9BQI4 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC3Q9BQI4 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC3Q9BQI4 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
CCDC3Q9BQI4 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
CCDC3Q9BQI4 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC3Q9BQI4 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC3Q9BQI4 SALL4P5-201ENST00000419001 1760 ntBASIC14.33□□□□□ -0.12
CCDC3Q9BQI4 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms