Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 MIR1247-201ENST00000408206 136 ntBASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 AL591846.1-201ENST00000451736 433 ntBASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 DUX4L47-201ENST00000566374 394 ntBASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 AC005695.3-201ENST00000614522 232 ntBASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 AC244157.2-201ENST00000616239 1006 ntBASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 AC138466.3-201ENST00000619983 221 ntBASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 GRN-222ENST00000639447 1314 ntTSL 2 BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 CYB561-202ENST00000392975 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 AC027612.1-201ENST00000445234 2395 ntBASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 TISP43-201ENST00000409793 538 ntTSL 4 BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 GPAA1P2-201ENST00000417923 928 ntBASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 AC026434.2-201ENST00000506094 1078 ntBASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 AC106820.3-201ENST00000561653 397 ntBASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 MIR3615-201ENST00000581999 87 ntBASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 AL096828.3-201ENST00000615354 462 ntBASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 AL008638.5-201ENST00000623814 1298 ntBASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 CLUHP2-201ENST00000426660 1303 ntBASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
CLIP3Q96DZ5 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms