Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC14.69□□□□□ -0.06
HMGB4Q8WW32 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 BANF1P3-201ENST00000412556 261 ntBASIC14.69□□□□□ -0.06
HMGB4Q8WW32 AL355334.1-201ENST00000417713 215 ntBASIC14.69□□□□□ -0.06
HMGB4Q8WW32 AL807761.2-201ENST00000422849 729 ntBASIC14.69□□□□□ -0.06
HMGB4Q8WW32 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 RPSAP15-201ENST00000448168 861 ntBASIC14.69□□□□□ -0.06
HMGB4Q8WW32 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 LCK-206ENST00000373564 2137 ntTSL 5 BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.69□□□□□ -0.06
HMGB4Q8WW32 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 AC007326.2-201ENST00000624224 7579 ntBASIC14.69□□□□□ -0.06
HMGB4Q8WW32 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 AC092135.3-201ENST00000624151 1846 ntBASIC14.69□□□□□ -0.06
HMGB4Q8WW32 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 CICP23-201ENST00000605013 2741 ntBASIC14.68□□□□□ -0.06
HMGB4Q8WW32 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 PFN2-202ENST00000423691 911 ntTSL 2 BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 NAGK-204ENST00000443872 878 ntTSL 3 BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 MIR4522-201ENST00000584932 87 ntBASIC14.68□□□□□ -0.06
HMGB4Q8WW32 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 HLA-C-210ENST00000640219 976 ntBASIC14.68□□□□□ -0.06
HMGB4Q8WW32 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 KRT8P28-201ENST00000433288 1390 ntBASIC14.68□□□□□ -0.06
HMGB4Q8WW32 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGB4Q8WW32 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 64.9 ms