Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 AC004899.1-201ENST00000424687 1714 ntBASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 MBLAC2-202ENST00000514906 1936 ntBASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 FAM86HP-204ENST00000513466 959 ntBASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 ADK-205ENST00000539909 1866 ntTSL 2 BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SHROOM3Q8TF72 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 KLF2P1-201ENST00000447438 1042 ntBASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 AKR7A2P1-201ENST00000460134 915 ntBASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 SERPINA13P-202ENST00000478994 924 ntBASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 CHMP4BP1-201ENST00000556017 588 ntBASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 AL662890.1-201ENST00000396818 632 ntBASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 SKA2-202ENST00000437036 625 ntTSL 2 BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 RPSAP36-202ENST00000494591 1261 ntBASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 DUX4L46-201ENST00000566845 751 ntBASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
SHROOM3Q8TF72 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHROOM3Q8TF72 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHROOM3Q8TF72 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHROOM3Q8TF72 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SHROOM3Q8TF72 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
SHROOM3Q8TF72 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHROOM3Q8TF72 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHROOM3Q8TF72 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
SHROOM3Q8TF72 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC14.88□□□□□ -0.03
SHROOM3Q8TF72 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC14.88□□□□□ -0.03
SHROOM3Q8TF72 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC14.88□□□□□ -0.03
SHROOM3Q8TF72 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC14.88□□□□□ -0.03
SHROOM3Q8TF72 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
SHROOM3Q8TF72 AC016397.2-201ENST00000624848 1985 ntBASIC14.88□□□□□ -0.03
SHROOM3Q8TF72 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHROOM3Q8TF72 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 73.6 ms