Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SYNE3Q6ZMZ3 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
SYNE3Q6ZMZ3 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SYNE3Q6ZMZ3 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SYNE3Q6ZMZ3 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
SYNE3Q6ZMZ3 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC17.33■□□□□ 0.37
SYNE3Q6ZMZ3 F10-203ENST00000409306 1450 ntTSL 3 BASIC17.33■□□□□ 0.37
SYNE3Q6ZMZ3 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SYNE3Q6ZMZ3 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SYNE3Q6ZMZ3 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SYNE3Q6ZMZ3 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC17.33■□□□□ 0.36
SYNE3Q6ZMZ3 YBX1P6-201ENST00000442962 1002 ntBASIC17.33■□□□□ 0.36
SYNE3Q6ZMZ3 AP006547.1-201ENST00000563435 692 ntBASIC17.33■□□□□ 0.36
SYNE3Q6ZMZ3 AC008825.2-201ENST00000603374 718 ntBASIC17.33■□□□□ 0.36
SYNE3Q6ZMZ3 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SYNE3Q6ZMZ3 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
SYNE3Q6ZMZ3 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
SYNE3Q6ZMZ3 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
SYNE3Q6ZMZ3 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC17.33■□□□□ 0.36
SYNE3Q6ZMZ3 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC17.33■□□□□ 0.36
SYNE3Q6ZMZ3 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
SYNE3Q6ZMZ3 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SYNE3Q6ZMZ3 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SYNE3Q6ZMZ3 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
SYNE3Q6ZMZ3 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC17.33■□□□□ 0.36
SYNE3Q6ZMZ3 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
SYNE3Q6ZMZ3 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SYNE3Q6ZMZ3 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
SYNE3Q6ZMZ3 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC17.33■□□□□ 0.36
SYNE3Q6ZMZ3 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SYNE3Q6ZMZ3 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SYNE3Q6ZMZ3 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 GK-202ENST00000378941 458 ntTSL 3 BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 ATP5G2P4-201ENST00000442175 420 ntBASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 HNRNPA1P48-202ENST00000565308 961 ntBASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 IFT20-216ENST00000588477 774 ntTSL 5 BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 AL136301.1-201ENST00000615830 422 ntBASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 MVK-217ENST00000639206 367 ntTSL 5 BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SYNE3Q6ZMZ3 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 TPO-206ENST00000382269 1155 ntTSL 5 BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 AC099336.1-201ENST00000417053 1171 ntBASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 CHMP1AP1-201ENST00000445563 662 ntBASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 AL358472.3-201ENST00000608147 415 ntBASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms