Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 AC112693.3-201ENST00000624819 1983 ntBASIC14.18□□□□□ -0.14
COL28A1Q2UY09 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 AC006486.2-201ENST00000624246 2199 ntBASIC14.18□□□□□ -0.14
COL28A1Q2UY09 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 GHSR-202ENST00000427970 912 ntBASIC14.18□□□□□ -0.14
COL28A1Q2UY09 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 PUDPP3-201ENST00000445368 636 ntBASIC14.18□□□□□ -0.14
COL28A1Q2UY09 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 FAM86KP-201ENST00000509817 987 ntBASIC14.18□□□□□ -0.14
COL28A1Q2UY09 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 AC012158.2-201ENST00000536546 354 ntBASIC14.18□□□□□ -0.14
COL28A1Q2UY09 SAMD11P1-201ENST00000571429 661 ntBASIC14.18□□□□□ -0.14
COL28A1Q2UY09 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 NAT9-211ENST00000580632 799 ntTSL 3 BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 AC138894.2-201ENST00000602838 371 ntBASIC14.18□□□□□ -0.14
COL28A1Q2UY09 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 TPO-203ENST00000346956 2923 ntTSL 5 BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 AL160314.3-201ENST00000556041 767 ntBASIC14.17□□□□□ -0.14
COL28A1Q2UY09 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL28A1Q2UY09 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms