Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC19.89■□□□□ 0.77
MSH6P52701 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
MSH6P52701 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
MSH6P52701 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC19.89■□□□□ 0.77
MSH6P52701 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC19.89■□□□□ 0.77
MSH6P52701 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
MSH6P52701 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC19.89■□□□□ 0.77
MSH6P52701 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC19.89■□□□□ 0.77
MSH6P52701 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC19.89■□□□□ 0.77
MSH6P52701 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
MSH6P52701 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC19.89■□□□□ 0.77
MSH6P52701 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH6P52701 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH6P52701 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC19.88■□□□□ 0.77
MSH6P52701 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH6P52701 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH6P52701 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC19.88■□□□□ 0.77
MSH6P52701 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH6P52701 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC19.88■□□□□ 0.77
MSH6P52701 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
MSH6P52701 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH6P52701 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
MSH6P52701 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH6P52701 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH6P52701 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH6P52701 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH6P52701 AC006987.1-201ENST00000413610 527 ntBASIC19.88■□□□□ 0.77
MSH6P52701 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
MSH6P52701 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH6P52701 C11orf58-207ENST00000525684 575 ntTSL 2 BASIC19.88■□□□□ 0.77
MSH6P52701 DHDDS-217ENST00000526219 1072 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
MSH6P52701 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH6P52701 C11orf58-209ENST00000528634 776 ntTSL 5 BASIC19.88■□□□□ 0.77
MSH6P52701 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH6P52701 AL132994.1-201ENST00000554098 400 ntBASIC19.88■□□□□ 0.77
MSH6P52701 MIR4254-201ENST00000581063 76 ntBASIC19.88■□□□□ 0.77
MSH6P52701 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC19.88■□□□□ 0.77
MSH6P52701 AC008906.2-201ENST00000606656 474 ntTSL 2 BASIC19.88■□□□□ 0.77
MSH6P52701 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH6P52701 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
MSH6P52701 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC19.88■□□□□ 0.77
MSH6P52701 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH6P52701 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH6P52701 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
MSH6P52701 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC19.88■□□□□ 0.77
MSH6P52701 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
MSH6P52701 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH6P52701 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC19.88■□□□□ 0.77
MSH6P52701 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
MSH6P52701 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH6P52701 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC19.88■□□□□ 0.77
MSH6P52701 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH6P52701 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
MSH6P52701 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
MSH6P52701 AC020658.6-201ENST00000623564 1870 ntBASIC19.87■□□□□ 0.77
MSH6P52701 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSH6P52701 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSH6P52701 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSH6P52701 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSH6P52701 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC19.87■□□□□ 0.77
MSH6P52701 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
MSH6P52701 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC19.87■□□□□ 0.77
MSH6P52701 AP000244.1-201ENST00000424582 201 ntBASIC19.87■□□□□ 0.77
MSH6P52701 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC19.87■□□□□ 0.77
MSH6P52701 RN7SL128P-201ENST00000467883 305 ntBASIC19.87■□□□□ 0.77
MSH6P52701 EEF1GP8-201ENST00000506566 1154 ntBASIC19.87■□□□□ 0.77
MSH6P52701 RN7SKP155-201ENST00000516031 288 ntBASIC19.87■□□□□ 0.77
MSH6P52701 KHDRBS3-206ENST00000520981 1243 ntTSL 5 BASIC19.87■□□□□ 0.77
MSH6P52701 CTBP2P6-201ENST00000526402 1229 ntBASIC19.87■□□□□ 0.77
MSH6P52701 AP004550.1-201ENST00000532652 514 ntTSL 3 BASIC19.87■□□□□ 0.77
MSH6P52701 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC19.87■□□□□ 0.77
MSH6P52701 AC073896.4-201ENST00000553176 403 ntTSL 2 BASIC19.87■□□□□ 0.77
MSH6P52701 MT1G-203ENST00000568675 628 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
MSH6P52701 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC19.87■□□□□ 0.77
MSH6P52701 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC19.87■□□□□ 0.77
MSH6P52701 AC092073.1-202ENST00000606020 653 ntTSL 3 BASIC19.87■□□□□ 0.77
MSH6P52701 GGNBP1-204ENST00000613113 887 ntBASIC19.87■□□□□ 0.77
MSH6P52701 AC091769.1-201ENST00000619576 568 ntBASIC19.87■□□□□ 0.77
MSH6P52701 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSH6P52701 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
MSH6P52701 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC19.87■□□□□ 0.77
MSH6P52701 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
MSH6P52701 AC008536.3-201ENST00000623282 1599 ntBASIC19.87■□□□□ 0.77
MSH6P52701 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC19.87■□□□□ 0.77
MSH6P52701 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSH6P52701 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC19.87■□□□□ 0.77
MSH6P52701 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC19.87■□□□□ 0.77
MSH6P52701 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC19.87■□□□□ 0.77
MSH6P52701 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
MSH6P52701 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSH6P52701 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSH6P52701 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSH6P52701 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSH6P52701 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
MSH6P52701 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSH6P52701 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
MSH6P52701 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
MSH6P52701 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
MSH6P52701 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
MSH6P52701 OR10N1P-201ENST00000392758 869 ntBASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms