Protein–RNA interactions for Protein: P30408

TM4SF1, Transmembrane 4 L6 family member 1, humanhuman

Predictions only

Length 202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM4SF1P30408 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TM4SF1P30408 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TM4SF1P30408 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TM4SF1P30408 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
TM4SF1P30408 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC17.82■□□□□ 0.44
TM4SF1P30408 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TM4SF1P30408 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
TM4SF1P30408 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
TM4SF1P30408 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
TM4SF1P30408 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TM4SF1P30408 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC17.82■□□□□ 0.44
TM4SF1P30408 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
TM4SF1P30408 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC17.82■□□□□ 0.44
TM4SF1P30408 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
TM4SF1P30408 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
TM4SF1P30408 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TM4SF1P30408 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TM4SF1P30408 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TM4SF1P30408 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TM4SF1P30408 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC17.81■□□□□ 0.44
TM4SF1P30408 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC17.81■□□□□ 0.44
TM4SF1P30408 LINC00115-201ENST00000473798 1317 ntBASIC17.81■□□□□ 0.44
TM4SF1P30408 ENPP7P8-202ENST00000527856 1345 ntBASIC17.81■□□□□ 0.44
TM4SF1P30408 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC17.81■□□□□ 0.44
TM4SF1P30408 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TM4SF1P30408 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TM4SF1P30408 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TM4SF1P30408 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
TM4SF1P30408 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC17.81■□□□□ 0.44
TM4SF1P30408 AC092573.1-201ENST00000433054 884 ntBASIC17.81■□□□□ 0.44
TM4SF1P30408 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC17.81■□□□□ 0.44
TM4SF1P30408 AC025186.1-201ENST00000478174 870 ntBASIC17.81■□□□□ 0.44
TM4SF1P30408 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
TM4SF1P30408 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC17.81■□□□□ 0.44
TM4SF1P30408 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC17.81■□□□□ 0.44
TM4SF1P30408 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC17.81■□□□□ 0.44
TM4SF1P30408 RN7SL455P-201ENST00000580629 282 ntBASIC17.81■□□□□ 0.44
TM4SF1P30408 AL160191.2-201ENST00000603975 601 ntBASIC17.81■□□□□ 0.44
TM4SF1P30408 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC17.81■□□□□ 0.44
TM4SF1P30408 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
TM4SF1P30408 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TM4SF1P30408 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.81■□□□□ 0.44
TM4SF1P30408 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TM4SF1P30408 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
TM4SF1P30408 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
TM4SF1P30408 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
TM4SF1P30408 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC17.8■□□□□ 0.44
TM4SF1P30408 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
TM4SF1P30408 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.8■□□□□ 0.44
TM4SF1P30408 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TM4SF1P30408 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TM4SF1P30408 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC17.8■□□□□ 0.44
TM4SF1P30408 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TM4SF1P30408 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TM4SF1P30408 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC17.8■□□□□ 0.44
TM4SF1P30408 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
TM4SF1P30408 AC018529.2-202ENST00000611482 3087 ntBASIC17.8■□□□□ 0.44
TM4SF1P30408 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TM4SF1P30408 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TM4SF1P30408 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC17.8■□□□□ 0.44
TM4SF1P30408 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TM4SF1P30408 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC17.8■□□□□ 0.44
TM4SF1P30408 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC17.8■□□□□ 0.44
TM4SF1P30408 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC17.8■□□□□ 0.44
TM4SF1P30408 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC17.8■□□□□ 0.44
TM4SF1P30408 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
TM4SF1P30408 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
TM4SF1P30408 NAV1-210ENST00000593583 726 ntBASIC17.8■□□□□ 0.44
TM4SF1P30408 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC17.8■□□□□ 0.44
TM4SF1P30408 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
TM4SF1P30408 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TM4SF1P30408 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TM4SF1P30408 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.8■□□□□ 0.44
TM4SF1P30408 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
TM4SF1P30408 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TM4SF1P30408 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
TM4SF1P30408 AC022532.1-201ENST00000624563 1728 ntBASIC17.8■□□□□ 0.44
TM4SF1P30408 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TM4SF1P30408 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TM4SF1P30408 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TM4SF1P30408 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
TM4SF1P30408 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.8■□□□□ 0.44
TM4SF1P30408 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TM4SF1P30408 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TM4SF1P30408 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TM4SF1P30408 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
TM4SF1P30408 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TM4SF1P30408 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
TM4SF1P30408 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
TM4SF1P30408 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TM4SF1P30408 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC17.79■□□□□ 0.44
TM4SF1P30408 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
TM4SF1P30408 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.79■□□□□ 0.44
TM4SF1P30408 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TM4SF1P30408 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
TM4SF1P30408 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TM4SF1P30408 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TM4SF1P30408 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC17.79■□□□□ 0.44
TM4SF1P30408 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
TM4SF1P30408 AC132872.4-202ENST00000622924 2756 ntBASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms