Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC16.71■□□□□ 0.27
SMARCA1P28370 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SMARCA1P28370 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
SMARCA1P28370 AC063926.3-201ENST00000624734 5658 ntBASIC16.71■□□□□ 0.26
SMARCA1P28370 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
SMARCA1P28370 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
SMARCA1P28370 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC16.71■□□□□ 0.26
SMARCA1P28370 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
SMARCA1P28370 INTS4P1-203ENST00000641008 3683 ntBASIC16.71■□□□□ 0.26
SMARCA1P28370 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
SMARCA1P28370 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SMARCA1P28370 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SMARCA1P28370 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC16.7■□□□□ 0.26
SMARCA1P28370 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SMARCA1P28370 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC16.7■□□□□ 0.26
SMARCA1P28370 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
SMARCA1P28370 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SMARCA1P28370 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SMARCA1P28370 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
SMARCA1P28370 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SMARCA1P28370 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC16.7■□□□□ 0.26
SMARCA1P28370 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SMARCA1P28370 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC16.7■□□□□ 0.26
SMARCA1P28370 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SMARCA1P28370 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SMARCA1P28370 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SMARCA1P28370 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC16.7■□□□□ 0.26
SMARCA1P28370 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SMARCA1P28370 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
SMARCA1P28370 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SMARCA1P28370 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SMARCA1P28370 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SMARCA1P28370 MIR769-201ENST00000390225 118 ntBASIC16.7■□□□□ 0.26
SMARCA1P28370 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SMARCA1P28370 CYP46A4P-201ENST00000414953 267 ntBASIC16.7■□□□□ 0.26
SMARCA1P28370 DEF8-202ENST00000418391 852 ntTSL 2 BASIC16.7■□□□□ 0.26
SMARCA1P28370 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC16.7■□□□□ 0.26
SMARCA1P28370 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SMARCA1P28370 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC16.7■□□□□ 0.26
SMARCA1P28370 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC16.7■□□□□ 0.26
SMARCA1P28370 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC16.7■□□□□ 0.26
SMARCA1P28370 AC005077.2-201ENST00000449786 690 ntBASIC16.7■□□□□ 0.26
SMARCA1P28370 SPTLC1P5-201ENST00000450718 252 ntBASIC16.7■□□□□ 0.26
SMARCA1P28370 AC022494.1-201ENST00000466044 728 ntBASIC16.7■□□□□ 0.26
SMARCA1P28370 AL161670.2-201ENST00000557650 1227 ntBASIC16.7■□□□□ 0.26
SMARCA1P28370 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC16.7■□□□□ 0.26
SMARCA1P28370 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC16.7■□□□□ 0.26
SMARCA1P28370 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
SMARCA1P28370 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC16.7■□□□□ 0.26
SMARCA1P28370 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
SMARCA1P28370 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC16.7■□□□□ 0.26
SMARCA1P28370 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC16.7■□□□□ 0.26
SMARCA1P28370 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC16.7■□□□□ 0.26
SMARCA1P28370 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC16.7■□□□□ 0.26
SMARCA1P28370 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SMARCA1P28370 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SMARCA1P28370 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC16.7■□□□□ 0.26
SMARCA1P28370 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC16.7■□□□□ 0.26
SMARCA1P28370 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SMARCA1P28370 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
SMARCA1P28370 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SMARCA1P28370 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC16.7■□□□□ 0.26
SMARCA1P28370 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SMARCA1P28370 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC16.7■□□□□ 0.26
SMARCA1P28370 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC16.7■□□□□ 0.26
SMARCA1P28370 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
SMARCA1P28370 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC16.69■□□□□ 0.26
SMARCA1P28370 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SMARCA1P28370 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SMARCA1P28370 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SMARCA1P28370 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
SMARCA1P28370 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
SMARCA1P28370 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC16.69■□□□□ 0.26
SMARCA1P28370 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC16.69■□□□□ 0.26
SMARCA1P28370 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SMARCA1P28370 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC16.69■□□□□ 0.26
SMARCA1P28370 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SMARCA1P28370 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SMARCA1P28370 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
SMARCA1P28370 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
SMARCA1P28370 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC16.69■□□□□ 0.26
SMARCA1P28370 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SMARCA1P28370 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SMARCA1P28370 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SMARCA1P28370 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC16.69■□□□□ 0.26
SMARCA1P28370 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SMARCA1P28370 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC16.69■□□□□ 0.26
SMARCA1P28370 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SMARCA1P28370 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC16.69■□□□□ 0.26
SMARCA1P28370 AC006335.1-201ENST00000445200 547 ntBASIC16.69■□□□□ 0.26
SMARCA1P28370 KRT18P15-201ENST00000458108 1291 ntBASIC16.69■□□□□ 0.26
SMARCA1P28370 RHEB-207ENST00000496004 744 ntTSL 2 BASIC16.69■□□□□ 0.26
SMARCA1P28370 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC16.69■□□□□ 0.26
SMARCA1P28370 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC16.69■□□□□ 0.26
SMARCA1P28370 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
SMARCA1P28370 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC16.69■□□□□ 0.26
SMARCA1P28370 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC16.69■□□□□ 0.26
SMARCA1P28370 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SMARCA1P28370 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SMARCA1P28370 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 65.4 ms