Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LDB3O75112 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
LDB3O75112 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LDB3O75112 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
LDB3O75112 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
LDB3O75112 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LDB3O75112 AC026748.1-201ENST00000624349 3251 ntBASIC13.84□□□□□ -0.19
LDB3O75112 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LDB3O75112 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LDB3O75112 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.19
LDB3O75112 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
LDB3O75112 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC13.83□□□□□ -0.19
LDB3O75112 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC13.83□□□□□ -0.19
LDB3O75112 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.19
LDB3O75112 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.19
LDB3O75112 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.19
LDB3O75112 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
LDB3O75112 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
LDB3O75112 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.19
LDB3O75112 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.19
LDB3O75112 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.19
LDB3O75112 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.19
LDB3O75112 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LDB3O75112 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC13.83□□□□□ -0.2
LDB3O75112 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
LDB3O75112 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
LDB3O75112 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
LDB3O75112 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LDB3O75112 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC13.83□□□□□ -0.2
LDB3O75112 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LDB3O75112 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
LDB3O75112 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LDB3O75112 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
LDB3O75112 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC13.83□□□□□ -0.2
LDB3O75112 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
LDB3O75112 AK6-201ENST00000380818 1183 ntTSL 2 BASIC13.83□□□□□ -0.2
LDB3O75112 NDUFAB1P1-201ENST00000404262 460 ntBASIC13.83□□□□□ -0.2
LDB3O75112 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC13.83□□□□□ -0.2
LDB3O75112 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC13.83□□□□□ -0.2
LDB3O75112 BTBD6P1-201ENST00000412176 1267 ntBASIC13.83□□□□□ -0.2
LDB3O75112 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC13.83□□□□□ -0.2
LDB3O75112 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
LDB3O75112 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
LDB3O75112 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC13.83□□□□□ -0.2
LDB3O75112 FAM86HP-204ENST00000513466 959 ntBASIC13.83□□□□□ -0.2
LDB3O75112 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC13.83□□□□□ -0.2
LDB3O75112 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC13.83□□□□□ -0.2
LDB3O75112 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC13.83□□□□□ -0.2
LDB3O75112 DUX4L46-201ENST00000566845 751 ntBASIC13.83□□□□□ -0.2
LDB3O75112 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
LDB3O75112 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC13.83□□□□□ -0.2
LDB3O75112 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC13.83□□□□□ -0.2
LDB3O75112 UCKL1-AS1-201ENST00000623569 3602 ntBASIC13.83□□□□□ -0.2
LDB3O75112 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC13.83□□□□□ -0.2
LDB3O75112 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LDB3O75112 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
LDB3O75112 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
LDB3O75112 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
LDB3O75112 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
LDB3O75112 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
LDB3O75112 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
LDB3O75112 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LDB3O75112 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.2
LDB3O75112 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LDB3O75112 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
LDB3O75112 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
LDB3O75112 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
LDB3O75112 AC215219.1-201ENST00000400706 1817 ntBASIC13.83□□□□□ -0.2
LDB3O75112 KRT8P28-201ENST00000433288 1390 ntBASIC13.83□□□□□ -0.2
LDB3O75112 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC13.83□□□□□ -0.2
LDB3O75112 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC13.82□□□□□ -0.2
LDB3O75112 LINC01230-201ENST00000625222 3017 ntBASIC13.82□□□□□ -0.2
LDB3O75112 AC067750.1-201ENST00000608826 6545 ntBASIC13.82□□□□□ -0.2
LDB3O75112 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LDB3O75112 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LDB3O75112 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LDB3O75112 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC13.82□□□□□ -0.2
LDB3O75112 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LDB3O75112 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC13.82□□□□□ -0.2
LDB3O75112 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LDB3O75112 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC13.82□□□□□ -0.2
LDB3O75112 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
LDB3O75112 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LDB3O75112 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LDB3O75112 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
LDB3O75112 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC13.82□□□□□ -0.2
LDB3O75112 REXO1L6P-201ENST00000603433 1515 ntBASIC13.82□□□□□ -0.2
LDB3O75112 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LDB3O75112 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LDB3O75112 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC13.82□□□□□ -0.2
LDB3O75112 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LDB3O75112 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC13.82□□□□□ -0.2
LDB3O75112 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC13.82□□□□□ -0.2
LDB3O75112 SKA2-202ENST00000437036 625 ntTSL 2 BASIC13.82□□□□□ -0.2
LDB3O75112 GOLGA2P4-201ENST00000441462 777 ntBASIC13.82□□□□□ -0.2
LDB3O75112 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC13.82□□□□□ -0.2
LDB3O75112 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LDB3O75112 MIR4783-201ENST00000580343 82 ntBASIC13.82□□□□□ -0.2
LDB3O75112 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC13.82□□□□□ -0.2
LDB3O75112 AC132192.2-201ENST00000596206 1147 ntBASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms