Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HMGB4Q8WW32 KRT18P36-201ENST00000411618 1276 ntBASIC14.71□□□□□ -0.05
HMGB4Q8WW32 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC14.71□□□□□ -0.05
HMGB4Q8WW32 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC14.71□□□□□ -0.05
HMGB4Q8WW32 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC14.71□□□□□ -0.05
HMGB4Q8WW32 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HMGB4Q8WW32 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC14.71□□□□□ -0.05
HMGB4Q8WW32 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC14.71□□□□□ -0.05
HMGB4Q8WW32 HPN-206ENST00000597419 1212 ntTSL 5 BASIC14.71□□□□□ -0.05
HMGB4Q8WW32 AC005632.3-201ENST00000605544 308 ntBASIC14.71□□□□□ -0.05
HMGB4Q8WW32 MIR6842-201ENST00000612539 65 ntBASIC14.71□□□□□ -0.05
HMGB4Q8WW32 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.05
HMGB4Q8WW32 AP001065.2-201ENST00000617205 644 ntBASIC14.71□□□□□ -0.05
HMGB4Q8WW32 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGB4Q8WW32 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC14.71□□□□□ -0.05
HMGB4Q8WW32 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGB4Q8WW32 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC14.71□□□□□ -0.05
HMGB4Q8WW32 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.05
HMGB4Q8WW32 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
HMGB4Q8WW32 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGB4Q8WW32 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGB4Q8WW32 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC14.71□□□□□ -0.06
HMGB4Q8WW32 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
HMGB4Q8WW32 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
HMGB4Q8WW32 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
HMGB4Q8WW32 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.06
HMGB4Q8WW32 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
HMGB4Q8WW32 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC14.71□□□□□ -0.06
HMGB4Q8WW32 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC14.71□□□□□ -0.06
HMGB4Q8WW32 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 PGR-210ENST00000619228 3038 ntTSL 5 BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 RNA5SP359-201ENST00000364838 113 ntBASIC14.7□□□□□ -0.06
HMGB4Q8WW32 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 AC093752.3-201ENST00000567343 901 ntBASIC14.7□□□□□ -0.06
HMGB4Q8WW32 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 AC007326.1-201ENST00000604539 458 ntBASIC14.7□□□□□ -0.06
HMGB4Q8WW32 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 WT1-AS_6.1-201ENST00000614919 121 ntBASIC14.7□□□□□ -0.06
HMGB4Q8WW32 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB4Q8WW32 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 LINC01101-201ENST00000622953 1884 ntBASIC14.69□□□□□ -0.06
HMGB4Q8WW32 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 AHCYP4-201ENST00000419201 1315 ntBASIC14.69□□□□□ -0.06
HMGB4Q8WW32 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB4Q8WW32 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms