Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 DDC-204ENST00000426377 1700 ntTSL 3 BASIC18.84■□□□□ 0.61
USP54Q70EL1 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP54Q70EL1 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
USP54Q70EL1 NME6-208ENST00000435684 599 ntTSL 2 BASIC18.84■□□□□ 0.61
USP54Q70EL1 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC18.84■□□□□ 0.61
USP54Q70EL1 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC18.84■□□□□ 0.61
USP54Q70EL1 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC18.84■□□□□ 0.61
USP54Q70EL1 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC18.84■□□□□ 0.61
USP54Q70EL1 EIF5AP2-201ENST00000585668 1047 ntBASIC18.84■□□□□ 0.61
USP54Q70EL1 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USP54Q70EL1 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC18.84■□□□□ 0.61
USP54Q70EL1 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC18.84■□□□□ 0.61
USP54Q70EL1 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC18.84■□□□□ 0.61
USP54Q70EL1 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC18.84■□□□□ 0.61
USP54Q70EL1 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP54Q70EL1 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP54Q70EL1 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC18.84■□□□□ 0.61
USP54Q70EL1 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USP54Q70EL1 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP54Q70EL1 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
USP54Q70EL1 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC18.84■□□□□ 0.61
USP54Q70EL1 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
USP54Q70EL1 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USP54Q70EL1 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
USP54Q70EL1 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC18.84■□□□□ 0.61
USP54Q70EL1 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP54Q70EL1 HSPA8P5-201ENST00000456928 2069 ntBASIC18.84■□□□□ 0.61
USP54Q70EL1 DKKL1P1-201ENST00000400550 698 ntBASIC18.83■□□□□ 0.61
USP54Q70EL1 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC18.83■□□□□ 0.61
USP54Q70EL1 TYMSP2-201ENST00000589501 424 ntBASIC18.83■□□□□ 0.61
USP54Q70EL1 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC18.83■□□□□ 0.61
USP54Q70EL1 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
USP54Q70EL1 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
USP54Q70EL1 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
USP54Q70EL1 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
USP54Q70EL1 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP54Q70EL1 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
USP54Q70EL1 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP54Q70EL1 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
USP54Q70EL1 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP54Q70EL1 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP54Q70EL1 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP54Q70EL1 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
USP54Q70EL1 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
USP54Q70EL1 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP54Q70EL1 FKBP4P8-201ENST00000610931 1369 ntBASIC18.82■□□□□ 0.6
USP54Q70EL1 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP54Q70EL1 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USP54Q70EL1 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC18.82■□□□□ 0.6
USP54Q70EL1 HLA-DMA-202ENST00000395303 1007 ntBASIC18.82■□□□□ 0.6
USP54Q70EL1 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC18.82■□□□□ 0.6
USP54Q70EL1 AL929302.1-201ENST00000426556 871 ntBASIC18.82■□□□□ 0.6
USP54Q70EL1 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC18.82■□□□□ 0.6
USP54Q70EL1 AC083801.1-201ENST00000491689 358 ntBASIC18.82■□□□□ 0.6
USP54Q70EL1 CISD2-202ENST00000503643 808 ntTSL 2 BASIC18.82■□□□□ 0.6
USP54Q70EL1 ABHD17AP9-201ENST00000561925 548 ntBASIC18.82■□□□□ 0.6
USP54Q70EL1 AC005274.1-201ENST00000623460 802 ntBASIC18.82■□□□□ 0.6
USP54Q70EL1 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC18.82■□□□□ 0.6
USP54Q70EL1 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP54Q70EL1 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USP54Q70EL1 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP54Q70EL1 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC18.82■□□□□ 0.6
USP54Q70EL1 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP54Q70EL1 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC18.82■□□□□ 0.6
USP54Q70EL1 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USP54Q70EL1 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USP54Q70EL1 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP54Q70EL1 MAL-204ENST00000354078 831 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USP54Q70EL1 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC18.82■□□□□ 0.6
USP54Q70EL1 OR10N1P-201ENST00000392758 869 ntBASIC18.82■□□□□ 0.6
USP54Q70EL1 RPL3P5-201ENST00000441645 1232 ntBASIC18.82■□□□□ 0.6
USP54Q70EL1 AC079250.1-201ENST00000456046 531 ntBASIC18.82■□□□□ 0.6
USP54Q70EL1 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC18.82■□□□□ 0.6
USP54Q70EL1 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC18.82■□□□□ 0.6
USP54Q70EL1 AC027139.1-201ENST00000565286 951 ntBASIC18.82■□□□□ 0.6
USP54Q70EL1 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
USP54Q70EL1 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
USP54Q70EL1 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USP54Q70EL1 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC18.81■□□□□ 0.6
USP54Q70EL1 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP54Q70EL1 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP54Q70EL1 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC18.81■□□□□ 0.6
USP54Q70EL1 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USP54Q70EL1 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP54Q70EL1 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP54Q70EL1 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP54Q70EL1 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC18.81■□□□□ 0.6
USP54Q70EL1 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USP54Q70EL1 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC18.81■□□□□ 0.6
USP54Q70EL1 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP54Q70EL1 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
USP54Q70EL1 RHOC-205ENST00000369636 786 ntTSL 2 BASIC18.81■□□□□ 0.6
USP54Q70EL1 MIR566-201ENST00000385187 94 ntBASIC18.81■□□□□ 0.6
USP54Q70EL1 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
USP54Q70EL1 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
USP54Q70EL1 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC18.81■□□□□ 0.6
USP54Q70EL1 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC18.81■□□□□ 0.6
USP54Q70EL1 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP54Q70EL1 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
USP54Q70EL1 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms