Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL4A4P53420 AC064801.2-201ENST00000625052 1303 ntBASIC15.26■□□□□ 0.03
COL4A4P53420 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL4A4P53420 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL4A4P53420 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL4A4P53420 SERPINA1-209ENST00000449399 1559 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL4A4P53420 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC15.26■□□□□ 0.03
COL4A4P53420 HLA-DPA2-205ENST00000433582 733 ntBASIC15.26■□□□□ 0.03
COL4A4P53420 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC15.26■□□□□ 0.03
COL4A4P53420 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL4A4P53420 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC15.26■□□□□ 0.03
COL4A4P53420 CYP4F36P-201ENST00000589193 186 ntBASIC15.26■□□□□ 0.03
COL4A4P53420 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC15.26■□□□□ 0.03
COL4A4P53420 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
COL4A4P53420 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL4A4P53420 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC15.26■□□□□ 0.03
COL4A4P53420 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL4A4P53420 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
COL4A4P53420 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
COL4A4P53420 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL4A4P53420 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
COL4A4P53420 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC15.26■□□□□ 0.03
COL4A4P53420 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL4A4P53420 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC15.26■□□□□ 0.03
COL4A4P53420 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
COL4A4P53420 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC15.26■□□□□ 0.03
COL4A4P53420 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL4A4P53420 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
COL4A4P53420 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
COL4A4P53420 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL4A4P53420 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL4A4P53420 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL4A4P53420 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL4A4P53420 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL4A4P53420 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
COL4A4P53420 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC15.25■□□□□ 0.03
COL4A4P53420 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL4A4P53420 KLHL7-204ENST00000410047 1233 ntTSL 5 BASIC15.25■□□□□ 0.03
COL4A4P53420 LINC00483-202ENST00000419688 558 ntTSL 3 BASIC15.25■□□□□ 0.03
COL4A4P53420 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC15.25■□□□□ 0.03
COL4A4P53420 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
COL4A4P53420 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL4A4P53420 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC15.25■□□□□ 0.03
COL4A4P53420 AC023968.2-201ENST00000560593 1049 ntBASIC15.25■□□□□ 0.03
COL4A4P53420 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
COL4A4P53420 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL4A4P53420 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC15.25■□□□□ 0.03
COL4A4P53420 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC15.25■□□□□ 0.03
COL4A4P53420 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC15.25■□□□□ 0.03
COL4A4P53420 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL4A4P53420 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL4A4P53420 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL4A4P53420 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL4A4P53420 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL4A4P53420 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL4A4P53420 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC15.25■□□□□ 0.03
COL4A4P53420 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC15.25■□□□□ 0.03
COL4A4P53420 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL4A4P53420 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL4A4P53420 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL4A4P53420 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL4A4P53420 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL4A4P53420 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC15.25■□□□□ 0.03
COL4A4P53420 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL4A4P53420 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC15.25■□□□□ 0.03
COL4A4P53420 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC15.25■□□□□ 0.03
COL4A4P53420 RPL3P2-204ENST00000413027 1203 ntBASIC15.25■□□□□ 0.03
COL4A4P53420 PPP1R2P4-201ENST00000424051 595 ntBASIC15.25■□□□□ 0.03
COL4A4P53420 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL4A4P53420 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC15.25■□□□□ 0.03
COL4A4P53420 AL161932.2-201ENST00000435436 679 ntBASIC15.25■□□□□ 0.03
COL4A4P53420 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC15.25■□□□□ 0.03
COL4A4P53420 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC15.25■□□□□ 0.03
COL4A4P53420 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC15.25■□□□□ 0.03
COL4A4P53420 ALG1L7P-201ENST00000502317 768 ntBASIC15.25■□□□□ 0.03
COL4A4P53420 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC15.25■□□□□ 0.03
COL4A4P53420 CHCHD2P2-201ENST00000503744 321 ntBASIC15.25■□□□□ 0.03
COL4A4P53420 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC15.25■□□□□ 0.03
COL4A4P53420 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
COL4A4P53420 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC15.25■□□□□ 0.03
COL4A4P53420 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC15.25■□□□□ 0.03
COL4A4P53420 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC15.25■□□□□ 0.03
COL4A4P53420 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC15.25■□□□□ 0.03
COL4A4P53420 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL4A4P53420 FUCA1P1-201ENST00000374476 1351 ntBASIC15.25■□□□□ 0.03
COL4A4P53420 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC15.25■□□□□ 0.03
COL4A4P53420 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL4A4P53420 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL4A4P53420 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL4A4P53420 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC15.24■□□□□ 0.03
COL4A4P53420 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC15.24■□□□□ 0.03
COL4A4P53420 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL4A4P53420 AC215219.1-201ENST00000400706 1817 ntBASIC15.24■□□□□ 0.03
COL4A4P53420 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL4A4P53420 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC15.24■□□□□ 0.03
COL4A4P53420 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL4A4P53420 MYB-242ENST00000618728 3545 ntTSL 5 BASIC15.24■□□□□ 0.03
COL4A4P53420 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL4A4P53420 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL4A4P53420 RNVU1-8-201ENST00000364272 125 ntBASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms