Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 HLA-DMB-258ENST00000418107 1397 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
HTTP42858 PSMC5-212ENST00000581882 1474 ntTSL 5 BASIC15.92■□□□□ 0.14
HTTP42858 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC15.92■□□□□ 0.14
HTTP42858 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HTTP42858 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HTTP42858 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC15.92■□□□□ 0.14
HTTP42858 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC15.92■□□□□ 0.14
HTTP42858 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC15.92■□□□□ 0.14
HTTP42858 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HTTP42858 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
HTTP42858 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC15.92■□□□□ 0.14
HTTP42858 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
HTTP42858 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HTTP42858 OASL-202ENST00000339275 1492 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HTTP42858 RIC3-205ENST00000425599 867 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HTTP42858 STAU2-212ENST00000521419 972 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HTTP42858 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
HTTP42858 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
HTTP42858 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HTTP42858 AL162727.3-201ENST00000635661 2787 ntBASIC15.92■□□□□ 0.14
HTTP42858 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HTTP42858 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HTTP42858 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
HTTP42858 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HTTP42858 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC15.91■□□□□ 0.14
HTTP42858 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC15.91■□□□□ 0.14
HTTP42858 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC15.91■□□□□ 0.14
HTTP42858 AP002414.2-201ENST00000591780 3365 ntBASIC15.91■□□□□ 0.14
HTTP42858 RPL4P6-201ENST00000438116 1304 ntBASIC15.91■□□□□ 0.14
HTTP42858 CALML6-201ENST00000307786 1101 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
HTTP42858 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC15.91■□□□□ 0.14
HTTP42858 FES-203ENST00000394302 2133 ntTSL 5 BASIC15.91■□□□□ 0.14
HTTP42858 MED15P3-201ENST00000413613 326 ntBASIC15.91■□□□□ 0.14
HTTP42858 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HTTP42858 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HTTP42858 PEBP1P3-201ENST00000455475 548 ntBASIC15.91■□□□□ 0.14
HTTP42858 SLC13A2-205ENST00000545060 1276 ntTSL 5 BASIC15.91■□□□□ 0.14
HTTP42858 RORA-AS1-202ENST00000558140 869 ntTSL 2 BASIC15.91■□□□□ 0.14
HTTP42858 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HTTP42858 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HTTP42858 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HTTP42858 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HTTP42858 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC15.91■□□□□ 0.14
HTTP42858 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HTTP42858 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC15.91■□□□□ 0.14
HTTP42858 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC15.91■□□□□ 0.14
HTTP42858 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC15.91■□□□□ 0.14
HTTP42858 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HTTP42858 LINC00682-202ENST00000499082 1384 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HTTP42858 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC15.91■□□□□ 0.14
HTTP42858 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC15.91■□□□□ 0.14
HTTP42858 KRTAP12-2-201ENST00000360770 739 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
HTTP42858 SNHG4-204ENST00000507197 865 ntTSL 2 BASIC15.91■□□□□ 0.14
HTTP42858 AC078852.1-201ENST00000515842 441 ntTSL 3 BASIC15.91■□□□□ 0.14
HTTP42858 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC15.91■□□□□ 0.14
HTTP42858 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC15.91■□□□□ 0.14
HTTP42858 AL121790.2-202ENST00000556024 363 ntTSL 5 BASIC15.91■□□□□ 0.14
HTTP42858 AC106782.5-201ENST00000616011 337 ntBASIC15.91■□□□□ 0.14
HTTP42858 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.91■□□□□ 0.14
HTTP42858 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
HTTP42858 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC15.91■□□□□ 0.14
HTTP42858 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HTTP42858 AC020658.6-201ENST00000623564 1870 ntBASIC15.91■□□□□ 0.14
HTTP42858 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC15.91■□□□□ 0.14
HTTP42858 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HTTP42858 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HTTP42858 DOC2GP-204ENST00000639052 2548 ntBASIC15.9■□□□□ 0.14
HTTP42858 USP35-204ENST00000530267 2419 ntTSL 2 BASIC15.9■□□□□ 0.14
HTTP42858 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HTTP42858 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HTTP42858 MBP-230ENST00000528160 584 ntTSL 5 BASIC15.9■□□□□ 0.14
HTTP42858 AC112220.4-201ENST00000604982 1263 ntBASIC15.9■□□□□ 0.14
HTTP42858 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC15.9■□□□□ 0.14
HTTP42858 CCL3L3-203ENST00000619989 784 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HTTP42858 OAZ3-207ENST00000627780 850 ntTSL 5 BASIC15.9■□□□□ 0.14
HTTP42858 OAZ3-209ENST00000635322 745 ntTSL 5 BASIC15.9■□□□□ 0.14
HTTP42858 BANP-204ENST00000393208 2283 ntTSL 2 BASIC15.9■□□□□ 0.14
HTTP42858 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HTTP42858 PRMT5-202ENST00000324366 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HTTP42858 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HTTP42858 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC15.9■□□□□ 0.14
HTTP42858 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HTTP42858 TPPP3-205ENST00000564104 1736 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HTTP42858 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC15.9■□□□□ 0.14
HTTP42858 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HTTP42858 PCP2-201ENST00000311069 776 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
HTTP42858 IFITM1-201ENST00000328221 844 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
HTTP42858 NCR1-204ENST00000357397 594 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HTTP42858 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC15.9■□□□□ 0.14
HTTP42858 KCNMA1-AS1-201ENST00000426234 863 ntTSL 5 BASIC15.9■□□□□ 0.14
HTTP42858 RN7SL33P-201ENST00000462543 342 ntBASIC15.9■□□□□ 0.14
HTTP42858 TCL1A-209ENST00000557043 980 ntTSL 3 BASIC15.9■□□□□ 0.14
HTTP42858 SKA2-205ENST00000580541 689 ntTSL 3 BASIC15.9■□□□□ 0.14
HTTP42858 CYP1B1-AS1-204ENST00000589303 579 ntTSL 5 BASIC15.9■□□□□ 0.14
HTTP42858 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
HTTP42858 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HTTP42858 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HTTP42858 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HTTP42858 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HTTP42858 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms