Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC13.53□□□□□ -0.24
MSX1P28360 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC13.53□□□□□ -0.24
MSX1P28360 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
MSX1P28360 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
MSX1P28360 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
MSX1P28360 USP35-204ENST00000530267 2419 ntTSL 2 BASIC13.53□□□□□ -0.24
MSX1P28360 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
MSX1P28360 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
MSX1P28360 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC13.53□□□□□ -0.24
MSX1P28360 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC13.53□□□□□ -0.24
MSX1P28360 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC13.53□□□□□ -0.24
MSX1P28360 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
MSX1P28360 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
MSX1P28360 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
MSX1P28360 CICP24-201ENST00000605464 2705 ntBASIC13.53□□□□□ -0.24
MSX1P28360 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
MSX1P28360 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
MSX1P28360 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
MSX1P28360 TPO-203ENST00000346956 2923 ntTSL 5 BASIC13.53□□□□□ -0.24
MSX1P28360 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC13.53□□□□□ -0.24
MSX1P28360 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
MSX1P28360 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
MSX1P28360 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
MSX1P28360 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
MSX1P28360 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
MSX1P28360 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
MSX1P28360 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC13.52□□□□□ -0.24
MSX1P28360 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC13.52□□□□□ -0.24
MSX1P28360 CDK12-201ENST00000430627 5918 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.24
MSX1P28360 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC13.52□□□□□ -0.24
MSX1P28360 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC13.52□□□□□ -0.24
MSX1P28360 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
MSX1P28360 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
MSX1P28360 SLC4A5-201ENST00000346834 6233 ntAPPRIS P4 TSL 5 BASIC13.52□□□□□ -0.24
MSX1P28360 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
MSX1P28360 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC13.52□□□□□ -0.24
MSX1P28360 APAF1-202ENST00000357310 7055 ntAPPRIS ALT1 TSL 5 BASIC13.52□□□□□ -0.24
MSX1P28360 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
MSX1P28360 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
MSX1P28360 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
MSX1P28360 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
MSX1P28360 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
MSX1P28360 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
MSX1P28360 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
MSX1P28360 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
MSX1P28360 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
MSX1P28360 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
MSX1P28360 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
MSX1P28360 CHMP1AP1-201ENST00000445563 662 ntBASIC13.52□□□□□ -0.25
MSX1P28360 TPT1P11-201ENST00000458482 498 ntBASIC13.52□□□□□ -0.25
MSX1P28360 APOA2-204ENST00000464492 530 ntTSL 3 BASIC13.52□□□□□ -0.25
MSX1P28360 RPSAP36-202ENST00000494591 1261 ntBASIC13.52□□□□□ -0.25
MSX1P28360 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC13.52□□□□□ -0.25
MSX1P28360 NCK2-206ENST00000522586 490 ntTSL 5 BASIC13.52□□□□□ -0.25
MSX1P28360 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC13.52□□□□□ -0.25
MSX1P28360 COG4-212ENST00000564653 590 ntTSL 5 BASIC13.52□□□□□ -0.25
MSX1P28360 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC13.52□□□□□ -0.25
MSX1P28360 AC104982.3-201ENST00000581995 514 ntBASIC13.52□□□□□ -0.25
MSX1P28360 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
MSX1P28360 AC026790.2-201ENST00000606282 430 ntBASIC13.52□□□□□ -0.25
MSX1P28360 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC13.52□□□□□ -0.25
MSX1P28360 AL021578.1-201ENST00000613646 709 ntBASIC13.52□□□□□ -0.25
MSX1P28360 AC103798.2-201ENST00000624292 632 ntBASIC13.52□□□□□ -0.25
MSX1P28360 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC13.52□□□□□ -0.25
MSX1P28360 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
MSX1P28360 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC13.52□□□□□ -0.25
MSX1P28360 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
MSX1P28360 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
MSX1P28360 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC13.52□□□□□ -0.25
MSX1P28360 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
MSX1P28360 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
MSX1P28360 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC13.52□□□□□ -0.25
MSX1P28360 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
MSX1P28360 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
MSX1P28360 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
MSX1P28360 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC13.52□□□□□ -0.25
MSX1P28360 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
MSX1P28360 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
MSX1P28360 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
MSX1P28360 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
MSX1P28360 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
MSX1P28360 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.51□□□□□ -0.25
MSX1P28360 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
MSX1P28360 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
MSX1P28360 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
MSX1P28360 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC13.51□□□□□ -0.25
MSX1P28360 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
MSX1P28360 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC13.51□□□□□ -0.25
MSX1P28360 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
MSX1P28360 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
MSX1P28360 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
MSX1P28360 KRT8P4-201ENST00000509735 1454 ntBASIC13.51□□□□□ -0.25
MSX1P28360 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC13.51□□□□□ -0.25
MSX1P28360 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
MSX1P28360 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
MSX1P28360 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC13.51□□□□□ -0.25
MSX1P28360 ENKUR-202ENST00000376363 1318 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
MSX1P28360 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC13.51□□□□□ -0.25
MSX1P28360 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC13.51□□□□□ -0.25
MSX1P28360 KRTAP10-13P-201ENST00000412914 571 ntBASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms