Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC12.84□□□□□ -0.35
COL8A1P27658 AP005212.2-201ENST00000584979 510 ntBASIC12.84□□□□□ -0.35
COL8A1P27658 AC004686.1-201ENST00000605113 538 ntBASIC12.84□□□□□ -0.35
COL8A1P27658 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC12.84□□□□□ -0.35
COL8A1P27658 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC12.84□□□□□ -0.35
COL8A1P27658 AC009560.1-201ENST00000620208 434 ntBASIC12.84□□□□□ -0.35
COL8A1P27658 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL8A1P27658 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
COL8A1P27658 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL8A1P27658 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL8A1P27658 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL8A1P27658 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC12.84□□□□□ -0.35
COL8A1P27658 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL8A1P27658 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
COL8A1P27658 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL8A1P27658 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL8A1P27658 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL8A1P27658 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC12.84□□□□□ -0.35
COL8A1P27658 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL8A1P27658 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL8A1P27658 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL8A1P27658 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL8A1P27658 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL8A1P27658 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL8A1P27658 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL8A1P27658 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
COL8A1P27658 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
COL8A1P27658 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
COL8A1P27658 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC12.83□□□□□ -0.35
COL8A1P27658 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC12.83□□□□□ -0.35
COL8A1P27658 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL8A1P27658 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC12.83□□□□□ -0.36
COL8A1P27658 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC12.83□□□□□ -0.36
COL8A1P27658 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL8A1P27658 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL8A1P27658 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC12.83□□□□□ -0.36
COL8A1P27658 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL8A1P27658 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL8A1P27658 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL8A1P27658 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC12.83□□□□□ -0.36
COL8A1P27658 CYP4F23P-201ENST00000593402 1579 ntBASIC12.83□□□□□ -0.36
COL8A1P27658 MTHFR-217ENST00000641820 1569 ntBASIC12.83□□□□□ -0.36
COL8A1P27658 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC12.83□□□□□ -0.36
COL8A1P27658 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC12.83□□□□□ -0.36
COL8A1P27658 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC12.83□□□□□ -0.36
COL8A1P27658 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC12.83□□□□□ -0.36
COL8A1P27658 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL8A1P27658 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
COL8A1P27658 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL8A1P27658 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL8A1P27658 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC12.83□□□□□ -0.36
COL8A1P27658 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC12.83□□□□□ -0.36
COL8A1P27658 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC12.83□□□□□ -0.36
COL8A1P27658 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL8A1P27658 APOBEC3H-202ENST00000401756 1023 ntAPPRIS ALT2 TSL 3 BASIC12.83□□□□□ -0.36
COL8A1P27658 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC12.83□□□□□ -0.36
COL8A1P27658 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC12.83□□□□□ -0.36
COL8A1P27658 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC12.83□□□□□ -0.36
COL8A1P27658 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC12.83□□□□□ -0.36
COL8A1P27658 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL8A1P27658 RNA5SP417-201ENST00000516459 108 ntBASIC12.83□□□□□ -0.36
COL8A1P27658 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
COL8A1P27658 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC12.83□□□□□ -0.36
COL8A1P27658 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC12.83□□□□□ -0.36
COL8A1P27658 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL8A1P27658 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL8A1P27658 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
COL8A1P27658 HERC2P11-201ENST00000562845 725 ntBASIC12.83□□□□□ -0.36
COL8A1P27658 AC100756.2-201ENST00000569537 736 ntBASIC12.83□□□□□ -0.36
COL8A1P27658 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC12.83□□□□□ -0.36
COL8A1P27658 AC006548.2-201ENST00000605217 529 ntBASIC12.83□□□□□ -0.36
COL8A1P27658 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC12.83□□□□□ -0.36
COL8A1P27658 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL8A1P27658 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
COL8A1P27658 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL8A1P27658 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
COL8A1P27658 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC12.83□□□□□ -0.36
COL8A1P27658 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL8A1P27658 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC12.83□□□□□ -0.36
COL8A1P27658 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL8A1P27658 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
COL8A1P27658 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL8A1P27658 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC12.83□□□□□ -0.36
COL8A1P27658 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC12.83□□□□□ -0.36
COL8A1P27658 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
COL8A1P27658 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL8A1P27658 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC12.83□□□□□ -0.36
COL8A1P27658 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
COL8A1P27658 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC12.83□□□□□ -0.36
COL8A1P27658 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC12.83□□□□□ -0.36
COL8A1P27658 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL8A1P27658 DBET-201ENST00000630918 3363 ntBASIC12.83□□□□□ -0.36
COL8A1P27658 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL8A1P27658 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL8A1P27658 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL8A1P27658 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC12.82□□□□□ -0.36
COL8A1P27658 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC12.82□□□□□ -0.36
COL8A1P27658 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL8A1P27658 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL8A1P27658 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms