Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC17.34■□□□□ 0.37
HMGB1P09429 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC17.34■□□□□ 0.37
HMGB1P09429 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB1P09429 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
HMGB1P09429 LINC01230-201ENST00000625222 3017 ntBASIC17.34■□□□□ 0.37
HMGB1P09429 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB1P09429 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
HMGB1P09429 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HMGB1P09429 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
HMGB1P09429 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HMGB1P09429 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.37
HMGB1P09429 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC17.33■□□□□ 0.37
HMGB1P09429 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
HMGB1P09429 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
HMGB1P09429 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
HMGB1P09429 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
HMGB1P09429 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
HMGB1P09429 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.37
HMGB1P09429 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
HMGB1P09429 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
HMGB1P09429 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB1P09429 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
HMGB1P09429 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC17.33■□□□□ 0.36
HMGB1P09429 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.36
HMGB1P09429 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB1P09429 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB1P09429 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB1P09429 MIR326-201ENST00000362220 95 ntBASIC17.33■□□□□ 0.36
HMGB1P09429 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB1P09429 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB1P09429 AK6-201ENST00000380818 1183 ntTSL 2 BASIC17.33■□□□□ 0.36
HMGB1P09429 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB1P09429 AC079776.1-201ENST00000401540 1152 ntBASIC17.33■□□□□ 0.36
HMGB1P09429 HNRNPA1P27-201ENST00000412087 955 ntBASIC17.33■□□□□ 0.36
HMGB1P09429 AC005034.1-201ENST00000426657 489 ntBASIC17.33■□□□□ 0.36
HMGB1P09429 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC17.33■□□□□ 0.36
HMGB1P09429 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.36
HMGB1P09429 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC17.33■□□□□ 0.36
HMGB1P09429 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC17.33■□□□□ 0.36
HMGB1P09429 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB1P09429 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
HMGB1P09429 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC17.33■□□□□ 0.36
HMGB1P09429 RPS24-214ENST00000613865 538 ntTSL 5 BASIC17.33■□□□□ 0.36
HMGB1P09429 WNT11-204ENST00000621122 789 ntTSL 5 BASIC17.33■□□□□ 0.36
HMGB1P09429 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB1P09429 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC17.33■□□□□ 0.36
HMGB1P09429 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB1P09429 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB1P09429 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB1P09429 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB1P09429 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB1P09429 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
HMGB1P09429 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB1P09429 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
HMGB1P09429 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB1P09429 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC17.33■□□□□ 0.36
HMGB1P09429 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC17.33■□□□□ 0.36
HMGB1P09429 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB1P09429 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB1P09429 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC17.32■□□□□ 0.36
HMGB1P09429 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB1P09429 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
HMGB1P09429 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB1P09429 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB1P09429 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB1P09429 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB1P09429 SLC9A3P3-201ENST00000457608 2229 ntBASIC17.32■□□□□ 0.36
HMGB1P09429 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB1P09429 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB1P09429 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB1P09429 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB1P09429 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB1P09429 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB1P09429 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB1P09429 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB1P09429 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC17.32■□□□□ 0.36
HMGB1P09429 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC17.32■□□□□ 0.36
HMGB1P09429 GAS5-209ENST00000430245 723 ntTSL 3 BASIC17.32■□□□□ 0.36
HMGB1P09429 AL161932.2-201ENST00000435436 679 ntBASIC17.32■□□□□ 0.36
HMGB1P09429 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC17.32■□□□□ 0.36
HMGB1P09429 HIST2H2BB-201ENST00000449108 381 ntBASIC17.32■□□□□ 0.36
HMGB1P09429 AC104989.1-201ENST00000519711 778 ntBASIC17.32■□□□□ 0.36
HMGB1P09429 AP006547.1-201ENST00000563435 692 ntBASIC17.32■□□□□ 0.36
HMGB1P09429 DUX4L46-201ENST00000566845 751 ntBASIC17.32■□□□□ 0.36
HMGB1P09429 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB1P09429 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
HMGB1P09429 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB1P09429 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB1P09429 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB1P09429 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB1P09429 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB1P09429 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB1P09429 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
HMGB1P09429 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB1P09429 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC17.32■□□□□ 0.36
HMGB1P09429 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB1P09429 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB1P09429 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB1P09429 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB1P09429 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms