Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC11.11□□□□□ -0.63
COL6A5A8TX70 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
COL6A5A8TX70 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC11.11□□□□□ -0.63
COL6A5A8TX70 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC11.11□□□□□ -0.63
COL6A5A8TX70 VGLL1-201ENST00000370634 1215 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC11.11□□□□□ -0.63
COL6A5A8TX70 AC027612.2-201ENST00000436174 1145 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC11.11□□□□□ -0.63
COL6A5A8TX70 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC11.11□□□□□ -0.63
COL6A5A8TX70 AC100786.1-201ENST00000583018 513 ntTSL 3 BASIC11.11□□□□□ -0.63
COL6A5A8TX70 AC009041.4-201ENST00000620075 638 ntBASIC11.11□□□□□ -0.63
COL6A5A8TX70 AC245595.2-201ENST00000620141 1144 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 AC073869.4-201ENST00000620841 800 ntBASIC11.11□□□□□ -0.63
COL6A5A8TX70 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC11.11□□□□□ -0.63
COL6A5A8TX70 COG6-212ENST00000630730 186 ntTSL 5 BASIC11.11□□□□□ -0.63
COL6A5A8TX70 AC137936.2-202ENST00000638124 1146 ntTSL 5 BASIC11.11□□□□□ -0.63
COL6A5A8TX70 NR1I2-206ENST00000638727 1194 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
COL6A5A8TX70 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC11.11□□□□□ -0.63
COL6A5A8TX70 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
COL6A5A8TX70 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
COL6A5A8TX70 CACNB4-201ENST00000201943 1389 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC11.11□□□□□ -0.63
COL6A5A8TX70 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
COL6A5A8TX70 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 FAM83A-AS1-202ENST00000520576 1347 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
COL6A5A8TX70 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
COL6A5A8TX70 AC103702.1-201ENST00000548801 2630 ntBASIC11.1□□□□□ -0.63
COL6A5A8TX70 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
COL6A5A8TX70 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
COL6A5A8TX70 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC11.1□□□□□ -0.63
COL6A5A8TX70 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
COL6A5A8TX70 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC11.1□□□□□ -0.63
COL6A5A8TX70 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
COL6A5A8TX70 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC11.1□□□□□ -0.63
COL6A5A8TX70 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC11.1□□□□□ -0.63
COL6A5A8TX70 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
COL6A5A8TX70 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC11.1□□□□□ -0.63
COL6A5A8TX70 LXN-201ENST00000264265 1116 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
COL6A5A8TX70 KRT18P33-201ENST00000398525 1043 ntBASIC11.1□□□□□ -0.63
COL6A5A8TX70 AC010997.2-201ENST00000427610 260 ntTSL 3 BASIC11.1□□□□□ -0.63
COL6A5A8TX70 ST13P19-201ENST00000442505 1124 ntBASIC11.1□□□□□ -0.63
COL6A5A8TX70 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC11.1□□□□□ -0.63
COL6A5A8TX70 FAM213AP2-201ENST00000521579 683 ntBASIC11.1□□□□□ -0.63
COL6A5A8TX70 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC11.1□□□□□ -0.63
COL6A5A8TX70 VENTXP3-201ENST00000546480 773 ntBASIC11.1□□□□□ -0.63
COL6A5A8TX70 AL512356.1-201ENST00000548203 535 ntTSL 3 BASIC11.1□□□□□ -0.63
COL6A5A8TX70 ARL17B-207ENST00000575960 731 ntAPPRIS ALT2 TSL 3 BASIC11.1□□□□□ -0.63
COL6A5A8TX70 AC016590.1-201ENST00000588763 420 ntTSL 2 BASIC11.1□□□□□ -0.63
COL6A5A8TX70 GABARAPL1-219ENST00000629504 379 ntTSL 4 BASIC11.1□□□□□ -0.63
COL6A5A8TX70 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
COL6A5A8TX70 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
COL6A5A8TX70 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
COL6A5A8TX70 SULT1A1-203ENST00000395607 1386 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
COL6A5A8TX70 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
COL6A5A8TX70 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
COL6A5A8TX70 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
COL6A5A8TX70 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
COL6A5A8TX70 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
COL6A5A8TX70 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC11.1□□□□□ -0.63
COL6A5A8TX70 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC11.1□□□□□ -0.63
COL6A5A8TX70 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
COL6A5A8TX70 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC11.1□□□□□ -0.63
COL6A5A8TX70 NANOS3-201ENST00000339133 581 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
COL6A5A8TX70 WFDC2-203ENST00000342873 818 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
COL6A5A8TX70 MAL-202ENST00000349807 705 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
COL6A5A8TX70 AC022080.1-201ENST00000366255 781 ntBASIC11.1□□□□□ -0.63
COL6A5A8TX70 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC11.1□□□□□ -0.63
COL6A5A8TX70 AL136084.1-201ENST00000449172 318 ntBASIC11.1□□□□□ -0.63
COL6A5A8TX70 NALT1-202ENST00000450304 437 ntTSL 3 BASIC11.1□□□□□ -0.63
COL6A5A8TX70 HNRNPA3P6-201ENST00000472163 1006 ntBASIC11.1□□□□□ -0.63
COL6A5A8TX70 AC246817.2-204ENST00000517984 562 ntTSL 4 BASIC11.1□□□□□ -0.63
COL6A5A8TX70 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC11.1□□□□□ -0.63
COL6A5A8TX70 ALG10-202ENST00000538927 571 ntTSL 5 BASIC11.1□□□□□ -0.63
COL6A5A8TX70 LINC00643-202ENST00000553426 526 ntTSL 3 BASIC11.1□□□□□ -0.63
COL6A5A8TX70 VPS18-202ENST00000558474 873 ntTSL 3 BASIC11.1□□□□□ -0.63
COL6A5A8TX70 DTWD1-205ENST00000558653 1131 ntAPPRIS P1 TSL 3 BASIC11.1□□□□□ -0.63
COL6A5A8TX70 RN7SL556P-201ENST00000582856 298 ntBASIC11.1□□□□□ -0.63
COL6A5A8TX70 IRF3-213ENST00000596765 710 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
COL6A5A8TX70 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
COL6A5A8TX70 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
COL6A5A8TX70 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
COL6A5A8TX70 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
COL6A5A8TX70 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
COL6A5A8TX70 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC11.1□□□□□ -0.63
COL6A5A8TX70 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
COL6A5A8TX70 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
COL6A5A8TX70 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms