Protein–RNA interactions for Protein: R4GMX3

COMMD3-BMI1, COMMD3-BMI1 readthrough, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-BMI1R4GMX3 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.29■■□□□ 1
COMMD3-BMI1R4GMX3 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC21.29■■□□□ 1
COMMD3-BMI1R4GMX3 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.29■■□□□ 1
COMMD3-BMI1R4GMX3 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC21.29■■□□□ 1
COMMD3-BMI1R4GMX3 AL157400.5-201ENST00000507624 621 ntBASIC21.29■■□□□ 1
COMMD3-BMI1R4GMX3 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.29■■□□□ 1
COMMD3-BMI1R4GMX3 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.29■■□□□ 1
COMMD3-BMI1R4GMX3 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COMMD3-BMI1R4GMX3 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.28■■□□□ 1
COMMD3-BMI1R4GMX3 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC21.28■■□□□ 1
COMMD3-BMI1R4GMX3 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COMMD3-BMI1R4GMX3 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC21.28■■□□□ 1
COMMD3-BMI1R4GMX3 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COMMD3-BMI1R4GMX3 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.28■■□□□ 1
COMMD3-BMI1R4GMX3 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COMMD3-BMI1R4GMX3 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
COMMD3-BMI1R4GMX3 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC21.28■■□□□ 1
COMMD3-BMI1R4GMX3 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COMMD3-BMI1R4GMX3 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COMMD3-BMI1R4GMX3 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COMMD3-BMI1R4GMX3 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.28■■□□□ 1
COMMD3-BMI1R4GMX3 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC21.27■■□□□ 1
COMMD3-BMI1R4GMX3 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COMMD3-BMI1R4GMX3 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.27■■□□□ 1
COMMD3-BMI1R4GMX3 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COMMD3-BMI1R4GMX3 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC21.27■■□□□ 1
COMMD3-BMI1R4GMX3 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.27■■□□□ 1
COMMD3-BMI1R4GMX3 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
COMMD3-BMI1R4GMX3 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
COMMD3-BMI1R4GMX3 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
COMMD3-BMI1R4GMX3 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COMMD3-BMI1R4GMX3 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COMMD3-BMI1R4GMX3 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
COMMD3-BMI1R4GMX3 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
COMMD3-BMI1R4GMX3 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COMMD3-BMI1R4GMX3 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COMMD3-BMI1R4GMX3 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COMMD3-BMI1R4GMX3 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.25■□□□□ 0.99
COMMD3-BMI1R4GMX3 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COMMD3-BMI1R4GMX3 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COMMD3-BMI1R4GMX3 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COMMD3-BMI1R4GMX3 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COMMD3-BMI1R4GMX3 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
COMMD3-BMI1R4GMX3 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COMMD3-BMI1R4GMX3 AC060814.1-201ENST00000554326 538 ntBASIC21.25■□□□□ 0.99
COMMD3-BMI1R4GMX3 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COMMD3-BMI1R4GMX3 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
COMMD3-BMI1R4GMX3 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COMMD3-BMI1R4GMX3 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COMMD3-BMI1R4GMX3 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
COMMD3-BMI1R4GMX3 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COMMD3-BMI1R4GMX3 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
COMMD3-BMI1R4GMX3 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
COMMD3-BMI1R4GMX3 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
COMMD3-BMI1R4GMX3 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COMMD3-BMI1R4GMX3 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COMMD3-BMI1R4GMX3 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.24■□□□□ 0.99
COMMD3-BMI1R4GMX3 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
COMMD3-BMI1R4GMX3 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
COMMD3-BMI1R4GMX3 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COMMD3-BMI1R4GMX3 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COMMD3-BMI1R4GMX3 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC21.24■□□□□ 0.99
COMMD3-BMI1R4GMX3 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
COMMD3-BMI1R4GMX3 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COMMD3-BMI1R4GMX3 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COMMD3-BMI1R4GMX3 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COMMD3-BMI1R4GMX3 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC21.24■□□□□ 0.99
COMMD3-BMI1R4GMX3 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
COMMD3-BMI1R4GMX3 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COMMD3-BMI1R4GMX3 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COMMD3-BMI1R4GMX3 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COMMD3-BMI1R4GMX3 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COMMD3-BMI1R4GMX3 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
COMMD3-BMI1R4GMX3 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COMMD3-BMI1R4GMX3 MOB2-207ENST00000614710 705 ntTSL 5 BASIC21.23■□□□□ 0.99
COMMD3-BMI1R4GMX3 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COMMD3-BMI1R4GMX3 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC21.23■□□□□ 0.99
COMMD3-BMI1R4GMX3 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
COMMD3-BMI1R4GMX3 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
COMMD3-BMI1R4GMX3 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
COMMD3-BMI1R4GMX3 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
COMMD3-BMI1R4GMX3 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
COMMD3-BMI1R4GMX3 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COMMD3-BMI1R4GMX3 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC21.22■□□□□ 0.99
COMMD3-BMI1R4GMX3 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COMMD3-BMI1R4GMX3 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.22■□□□□ 0.99
COMMD3-BMI1R4GMX3 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.22■□□□□ 0.99
COMMD3-BMI1R4GMX3 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
COMMD3-BMI1R4GMX3 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COMMD3-BMI1R4GMX3 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COMMD3-BMI1R4GMX3 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
COMMD3-BMI1R4GMX3 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
COMMD3-BMI1R4GMX3 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
COMMD3-BMI1R4GMX3 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COMMD3-BMI1R4GMX3 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COMMD3-BMI1R4GMX3 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COMMD3-BMI1R4GMX3 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COMMD3-BMI1R4GMX3 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
COMMD3-BMI1R4GMX3 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COMMD3-BMI1R4GMX3 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms