Protein–RNA interactions for Protein: Q9Y4Z0

LSM4, U6 snRNA-associated Sm-like protein LSm4, humanhuman

Known RBP Predictions only

Length 139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4Q9Y4Z0 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LSM4Q9Y4Z0 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC18.18■□□□□ 0.5
LSM4Q9Y4Z0 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
LSM4Q9Y4Z0 PRTG-204ENST00000561292 833 ntTSL 3 BASIC18.18■□□□□ 0.5
LSM4Q9Y4Z0 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LSM4Q9Y4Z0 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
LSM4Q9Y4Z0 THA1P-201ENST00000590384 1145 ntBASIC18.18■□□□□ 0.5
LSM4Q9Y4Z0 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC18.18■□□□□ 0.5
LSM4Q9Y4Z0 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC18.18■□□□□ 0.5
LSM4Q9Y4Z0 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LSM4Q9Y4Z0 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
LSM4Q9Y4Z0 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC18.17■□□□□ 0.5
LSM4Q9Y4Z0 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LSM4Q9Y4Z0 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LSM4Q9Y4Z0 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LSM4Q9Y4Z0 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LSM4Q9Y4Z0 KRT18P10-201ENST00000388836 1287 ntBASIC18.17■□□□□ 0.5
LSM4Q9Y4Z0 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
LSM4Q9Y4Z0 AC019171.1-201ENST00000601251 1056 ntBASIC18.17■□□□□ 0.5
LSM4Q9Y4Z0 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC18.17■□□□□ 0.5
LSM4Q9Y4Z0 AL031848.2-201ENST00000607670 837 ntBASIC18.17■□□□□ 0.5
LSM4Q9Y4Z0 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
LSM4Q9Y4Z0 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LSM4Q9Y4Z0 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LSM4Q9Y4Z0 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LSM4Q9Y4Z0 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
LSM4Q9Y4Z0 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC18.17■□□□□ 0.5
LSM4Q9Y4Z0 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
LSM4Q9Y4Z0 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC18.17■□□□□ 0.5
LSM4Q9Y4Z0 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
LSM4Q9Y4Z0 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
LSM4Q9Y4Z0 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LSM4Q9Y4Z0 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC18.16■□□□□ 0.5
LSM4Q9Y4Z0 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
LSM4Q9Y4Z0 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
LSM4Q9Y4Z0 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC18.16■□□□□ 0.5
LSM4Q9Y4Z0 MTURN-203ENST00000409688 843 ntTSL 2 BASIC18.16■□□□□ 0.5
LSM4Q9Y4Z0 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LSM4Q9Y4Z0 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC18.16■□□□□ 0.5
LSM4Q9Y4Z0 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LSM4Q9Y4Z0 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LSM4Q9Y4Z0 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LSM4Q9Y4Z0 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
LSM4Q9Y4Z0 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LSM4Q9Y4Z0 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
LSM4Q9Y4Z0 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
LSM4Q9Y4Z0 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC18.15■□□□□ 0.5
LSM4Q9Y4Z0 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LSM4Q9Y4Z0 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
LSM4Q9Y4Z0 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC18.14■□□□□ 0.5
LSM4Q9Y4Z0 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
LSM4Q9Y4Z0 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LSM4Q9Y4Z0 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LSM4Q9Y4Z0 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LSM4Q9Y4Z0 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
LSM4Q9Y4Z0 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC18.14■□□□□ 0.49
LSM4Q9Y4Z0 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
LSM4Q9Y4Z0 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
LSM4Q9Y4Z0 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
LSM4Q9Y4Z0 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LSM4Q9Y4Z0 AC019069.1-201ENST00000610008 1333 ntBASIC18.14■□□□□ 0.49
LSM4Q9Y4Z0 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LSM4Q9Y4Z0 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LSM4Q9Y4Z0 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
LSM4Q9Y4Z0 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
LSM4Q9Y4Z0 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC18.14■□□□□ 0.49
LSM4Q9Y4Z0 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LSM4Q9Y4Z0 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LSM4Q9Y4Z0 CLDN5-201ENST00000403084 2357 ntBASIC18.13■□□□□ 0.49
LSM4Q9Y4Z0 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
LSM4Q9Y4Z0 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LSM4Q9Y4Z0 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
LSM4Q9Y4Z0 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC18.13■□□□□ 0.49
LSM4Q9Y4Z0 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LSM4Q9Y4Z0 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC18.13■□□□□ 0.49
LSM4Q9Y4Z0 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
LSM4Q9Y4Z0 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
LSM4Q9Y4Z0 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
LSM4Q9Y4Z0 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LSM4Q9Y4Z0 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC18.13■□□□□ 0.49
LSM4Q9Y4Z0 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LSM4Q9Y4Z0 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LSM4Q9Y4Z0 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LSM4Q9Y4Z0 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC18.12■□□□□ 0.49
LSM4Q9Y4Z0 ANOS2P-203ENST00000472227 1816 ntBASIC18.12■□□□□ 0.49
LSM4Q9Y4Z0 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC18.12■□□□□ 0.49
LSM4Q9Y4Z0 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC18.12■□□□□ 0.49
LSM4Q9Y4Z0 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LSM4Q9Y4Z0 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
LSM4Q9Y4Z0 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LSM4Q9Y4Z0 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
LSM4Q9Y4Z0 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LSM4Q9Y4Z0 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LSM4Q9Y4Z0 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
LSM4Q9Y4Z0 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC18.12■□□□□ 0.49
LSM4Q9Y4Z0 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
LSM4Q9Y4Z0 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC18.12■□□□□ 0.49
LSM4Q9Y4Z0 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LSM4Q9Y4Z0 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
LSM4Q9Y4Z0 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms