Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CUEDC1Q9NWM3 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC22.02■■□□□ 1.12
CUEDC1Q9NWM3 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC22.02■■□□□ 1.12
CUEDC1Q9NWM3 GRAMD4P7-201ENST00000578182 1232 ntBASIC22.02■■□□□ 1.12
CUEDC1Q9NWM3 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
CUEDC1Q9NWM3 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
CUEDC1Q9NWM3 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CUEDC1Q9NWM3 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
CUEDC1Q9NWM3 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC22.02■■□□□ 1.11
CUEDC1Q9NWM3 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CUEDC1Q9NWM3 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CUEDC1Q9NWM3 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CUEDC1Q9NWM3 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC22.01■■□□□ 1.11
CUEDC1Q9NWM3 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC22.01■■□□□ 1.11
CUEDC1Q9NWM3 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC22.01■■□□□ 1.11
CUEDC1Q9NWM3 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC22.01■■□□□ 1.11
CUEDC1Q9NWM3 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC22.01■■□□□ 1.11
CUEDC1Q9NWM3 MTDHP2-201ENST00000601468 714 ntBASIC22.01■■□□□ 1.11
CUEDC1Q9NWM3 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CUEDC1Q9NWM3 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CUEDC1Q9NWM3 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC22.01■■□□□ 1.11
CUEDC1Q9NWM3 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CUEDC1Q9NWM3 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
CUEDC1Q9NWM3 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC22■■□□□ 1.11
CUEDC1Q9NWM3 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC22■■□□□ 1.11
CUEDC1Q9NWM3 MIR638-201ENST00000385237 100 ntBASIC22■■□□□ 1.11
CUEDC1Q9NWM3 CLTA-206ENST00000466396 695 ntTSL 2 BASIC22■■□□□ 1.11
CUEDC1Q9NWM3 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
CUEDC1Q9NWM3 ALDH1A3-203ENST00000557963 1670 ntBASIC22■■□□□ 1.11
CUEDC1Q9NWM3 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC22■■□□□ 1.11
CUEDC1Q9NWM3 EI24-204ENST00000527235 1625 ntTSL 5 BASIC21.99■■□□□ 1.11
CUEDC1Q9NWM3 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CUEDC1Q9NWM3 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CUEDC1Q9NWM3 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CUEDC1Q9NWM3 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.99■■□□□ 1.11
CUEDC1Q9NWM3 AC010997.5-201ENST00000609182 354 ntBASIC21.99■■□□□ 1.11
CUEDC1Q9NWM3 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.99■■□□□ 1.11
CUEDC1Q9NWM3 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC21.99■■□□□ 1.11
CUEDC1Q9NWM3 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
CUEDC1Q9NWM3 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.99■■□□□ 1.11
CUEDC1Q9NWM3 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
CUEDC1Q9NWM3 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.99■■□□□ 1.11
CUEDC1Q9NWM3 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CUEDC1Q9NWM3 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.98■■□□□ 1.11
CUEDC1Q9NWM3 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CUEDC1Q9NWM3 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
CUEDC1Q9NWM3 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CUEDC1Q9NWM3 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC21.98■■□□□ 1.11
CUEDC1Q9NWM3 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
CUEDC1Q9NWM3 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.98■■□□□ 1.11
CUEDC1Q9NWM3 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
CUEDC1Q9NWM3 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.98■■□□□ 1.11
CUEDC1Q9NWM3 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CUEDC1Q9NWM3 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
CUEDC1Q9NWM3 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CUEDC1Q9NWM3 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC21.98■■□□□ 1.11
CUEDC1Q9NWM3 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CUEDC1Q9NWM3 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CUEDC1Q9NWM3 MIR6722-201ENST00000617286 78 ntBASIC21.97■■□□□ 1.11
CUEDC1Q9NWM3 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CUEDC1Q9NWM3 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CUEDC1Q9NWM3 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
CUEDC1Q9NWM3 LSM4-201ENST00000252816 986 ntTSL 2 BASIC21.96■■□□□ 1.11
CUEDC1Q9NWM3 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
CUEDC1Q9NWM3 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC21.96■■□□□ 1.11
CUEDC1Q9NWM3 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC21.96■■□□□ 1.11
CUEDC1Q9NWM3 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.96■■□□□ 1.11
CUEDC1Q9NWM3 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.96■■□□□ 1.11
CUEDC1Q9NWM3 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CUEDC1Q9NWM3 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CUEDC1Q9NWM3 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
CUEDC1Q9NWM3 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CUEDC1Q9NWM3 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CUEDC1Q9NWM3 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
CUEDC1Q9NWM3 CD72-202ENST00000378430 585 ntTSL 3 BASIC21.95■■□□□ 1.1
CUEDC1Q9NWM3 KRT16P3-201ENST00000439127 1283 ntBASIC21.95■■□□□ 1.1
CUEDC1Q9NWM3 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC21.95■■□□□ 1.1
CUEDC1Q9NWM3 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CUEDC1Q9NWM3 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CUEDC1Q9NWM3 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CUEDC1Q9NWM3 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC21.95■■□□□ 1.1
CUEDC1Q9NWM3 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CUEDC1Q9NWM3 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.95■■□□□ 1.1
CUEDC1Q9NWM3 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CUEDC1Q9NWM3 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CUEDC1Q9NWM3 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CUEDC1Q9NWM3 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CUEDC1Q9NWM3 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.94■■□□□ 1.1
CUEDC1Q9NWM3 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.94■■□□□ 1.1
CUEDC1Q9NWM3 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
CUEDC1Q9NWM3 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.94■■□□□ 1.1
CUEDC1Q9NWM3 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC21.94■■□□□ 1.1
CUEDC1Q9NWM3 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.94■■□□□ 1.1
CUEDC1Q9NWM3 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CUEDC1Q9NWM3 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC21.94■■□□□ 1.1
CUEDC1Q9NWM3 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CUEDC1Q9NWM3 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CUEDC1Q9NWM3 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
CUEDC1Q9NWM3 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC21.93■■□□□ 1.1
CUEDC1Q9NWM3 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.93■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms