Protein–RNA interactions for Protein: P49746

THBS3, Thrombospondin-3, humanhuman

Predictions only

Length 956 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
THBS3P49746 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
THBS3P49746 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
THBS3P49746 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC18.71■□□□□ 0.59
THBS3P49746 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
THBS3P49746 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
THBS3P49746 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
THBS3P49746 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
THBS3P49746 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
THBS3P49746 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC18.71■□□□□ 0.59
THBS3P49746 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
THBS3P49746 AC019171.1-201ENST00000601251 1056 ntBASIC18.71■□□□□ 0.59
THBS3P49746 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC18.71■□□□□ 0.59
THBS3P49746 CD37-213ENST00000598095 1598 ntTSL 2 BASIC18.71■□□□□ 0.59
THBS3P49746 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
THBS3P49746 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC18.71■□□□□ 0.58
THBS3P49746 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
THBS3P49746 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
THBS3P49746 BEX3-202ENST00000372634 753 ntTSL 2 BASIC18.7■□□□□ 0.58
THBS3P49746 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
THBS3P49746 MTX2-204ENST00000443241 799 ntTSL 3 BASIC18.7■□□□□ 0.58
THBS3P49746 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC18.7■□□□□ 0.58
THBS3P49746 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC18.7■□□□□ 0.58
THBS3P49746 DUSP8P5-201ENST00000422884 1815 ntBASIC18.7■□□□□ 0.58
THBS3P49746 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC18.69■□□□□ 0.58
THBS3P49746 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
THBS3P49746 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC18.69■□□□□ 0.58
THBS3P49746 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
THBS3P49746 PKD1P6-201ENST00000343738 4769 ntBASIC18.69■□□□□ 0.58
THBS3P49746 KRT8P33-201ENST00000508125 1423 ntBASIC18.69■□□□□ 0.58
THBS3P49746 YBX1P4-201ENST00000392794 808 ntBASIC18.69■□□□□ 0.58
THBS3P49746 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC18.69■□□□□ 0.58
THBS3P49746 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
THBS3P49746 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
THBS3P49746 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC18.69■□□□□ 0.58
THBS3P49746 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
THBS3P49746 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
THBS3P49746 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC18.68■□□□□ 0.58
THBS3P49746 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
THBS3P49746 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC18.68■□□□□ 0.58
THBS3P49746 AL022069.1-201ENST00000568025 1636 ntBASIC18.68■□□□□ 0.58
THBS3P49746 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
THBS3P49746 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC18.68■□□□□ 0.58
THBS3P49746 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
THBS3P49746 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
THBS3P49746 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
THBS3P49746 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
THBS3P49746 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
THBS3P49746 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC18.68■□□□□ 0.58
THBS3P49746 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
THBS3P49746 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
THBS3P49746 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
THBS3P49746 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC18.68■□□□□ 0.58
THBS3P49746 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
THBS3P49746 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
THBS3P49746 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC18.67■□□□□ 0.58
THBS3P49746 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC18.67■□□□□ 0.58
THBS3P49746 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
THBS3P49746 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
THBS3P49746 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
THBS3P49746 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
THBS3P49746 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
THBS3P49746 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
THBS3P49746 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
THBS3P49746 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC18.67■□□□□ 0.58
THBS3P49746 AL451085.2-201ENST00000605085 799 ntBASIC18.67■□□□□ 0.58
THBS3P49746 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
THBS3P49746 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
THBS3P49746 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
THBS3P49746 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
THBS3P49746 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
THBS3P49746 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
THBS3P49746 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
THBS3P49746 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC18.67■□□□□ 0.58
THBS3P49746 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
THBS3P49746 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
THBS3P49746 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
THBS3P49746 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
THBS3P49746 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC18.66■□□□□ 0.58
THBS3P49746 PVT1_1.1-201ENST00000615125 194 ntBASIC18.66■□□□□ 0.58
THBS3P49746 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
THBS3P49746 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
THBS3P49746 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
THBS3P49746 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
THBS3P49746 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
THBS3P49746 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
THBS3P49746 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
THBS3P49746 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC18.65■□□□□ 0.58
THBS3P49746 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
THBS3P49746 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
THBS3P49746 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC18.65■□□□□ 0.58
THBS3P49746 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
THBS3P49746 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
THBS3P49746 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC18.65■□□□□ 0.58
THBS3P49746 AL035685.1-201ENST00000636663 812 ntBASIC18.65■□□□□ 0.58
THBS3P49746 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC18.65■□□□□ 0.58
THBS3P49746 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
THBS3P49746 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
THBS3P49746 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC18.65■□□□□ 0.58
THBS3P49746 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
THBS3P49746 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms