Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 DRD5P2-201ENST00000421395 2012 ntBASIC26.69■■□□□ 1.86
CTCFP49711 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC26.69■■□□□ 1.86
CTCFP49711 APTR-205ENST00000447009 902 ntTSL 2 BASIC26.69■■□□□ 1.86
CTCFP49711 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC26.69■■□□□ 1.86
CTCFP49711 AC090877.2-201ENST00000558441 1738 ntBASIC26.69■■□□□ 1.86
CTCFP49711 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC26.69■■□□□ 1.86
CTCFP49711 SNAI3-AS1-204ENST00000567997 2048 ntBASIC26.68■■□□□ 1.86
CTCFP49711 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
CTCFP49711 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC26.68■■□□□ 1.86
CTCFP49711 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
CTCFP49711 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
CTCFP49711 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
CTCFP49711 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC26.68■■□□□ 1.86
CTCFP49711 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC26.68■■□□□ 1.86
CTCFP49711 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC26.68■■□□□ 1.86
CTCFP49711 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC26.68■■□□□ 1.86
CTCFP49711 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC26.68■■□□□ 1.86
CTCFP49711 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
CTCFP49711 AL449106.1-201ENST00000608517 1980 ntBASIC26.67■■□□□ 1.86
CTCFP49711 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CTCFP49711 CROCCP5-201ENST00000436658 830 ntBASIC26.67■■□□□ 1.86
CTCFP49711 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
CTCFP49711 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC26.67■■□□□ 1.86
CTCFP49711 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CTCFP49711 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC26.66■■□□□ 1.86
CTCFP49711 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC26.66■■□□□ 1.86
CTCFP49711 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC26.66■■□□□ 1.86
CTCFP49711 AC137761.2-201ENST00000561729 223 ntBASIC26.66■■□□□ 1.86
CTCFP49711 AC145350.3-201ENST00000569033 163 ntBASIC26.66■■□□□ 1.86
CTCFP49711 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
CTCFP49711 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC26.65■■□□□ 1.86
CTCFP49711 MIR3181-201ENST00000578512 73 ntBASIC26.65■■□□□ 1.86
CTCFP49711 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC26.65■■□□□ 1.86
CTCFP49711 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
CTCFP49711 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
CTCFP49711 FOXO3B-201ENST00000395675 1928 ntBASIC26.65■■□□□ 1.86
CTCFP49711 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC26.65■■□□□ 1.86
CTCFP49711 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC26.65■■□□□ 1.86
CTCFP49711 REST-206ENST00000612429 1376 ntTSL 5 BASIC26.64■■□□□ 1.86
CTCFP49711 REST-207ENST00000616975 1370 ntTSL 5 BASIC26.64■■□□□ 1.86
CTCFP49711 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
CTCFP49711 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC26.64■■□□□ 1.86
CTCFP49711 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
CTCFP49711 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
CTCFP49711 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC26.63■■□□□ 1.85
CTCFP49711 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC26.63■■□□□ 1.85
CTCFP49711 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
CTCFP49711 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC26.63■■□□□ 1.85
CTCFP49711 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC26.63■■□□□ 1.85
CTCFP49711 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC26.63■■□□□ 1.85
CTCFP49711 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
CTCFP49711 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC26.63■■□□□ 1.85
CTCFP49711 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
CTCFP49711 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
CTCFP49711 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
CTCFP49711 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC26.62■■□□□ 1.85
CTCFP49711 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC26.62■■□□□ 1.85
CTCFP49711 AC006455.2-201ENST00000429931 906 ntBASIC26.62■■□□□ 1.85
CTCFP49711 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC26.62■■□□□ 1.85
CTCFP49711 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC26.62■■□□□ 1.85
CTCFP49711 KRT18P6-201ENST00000555540 1265 ntBASIC26.62■■□□□ 1.85
CTCFP49711 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC26.62■■□□□ 1.85
CTCFP49711 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC26.62■■□□□ 1.85
CTCFP49711 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
CTCFP49711 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC26.61■■□□□ 1.85
CTCFP49711 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC26.61■■□□□ 1.85
CTCFP49711 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC26.61■■□□□ 1.85
CTCFP49711 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC26.61■■□□□ 1.85
CTCFP49711 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC26.61■■□□□ 1.85
CTCFP49711 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
CTCFP49711 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC26.61■■□□□ 1.85
CTCFP49711 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
CTCFP49711 AC009102.2-201ENST00000606772 1639 ntBASIC26.61■■□□□ 1.85
CTCFP49711 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
CTCFP49711 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
CTCFP49711 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC26.6■■□□□ 1.85
CTCFP49711 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
CTCFP49711 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
CTCFP49711 GPX1P1-201ENST00000388829 606 ntBASIC26.6■■□□□ 1.85
CTCFP49711 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
CTCFP49711 FAM201B-201ENST00000458407 597 ntBASIC26.6■■□□□ 1.85
CTCFP49711 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
CTCFP49711 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
CTCFP49711 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
CTCFP49711 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
CTCFP49711 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
CTCFP49711 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
CTCFP49711 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC26.59■■□□□ 1.85
CTCFP49711 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
CTCFP49711 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC26.59■■□□□ 1.85
CTCFP49711 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC26.59■■□□□ 1.85
CTCFP49711 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC26.59■■□□□ 1.85
CTCFP49711 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC26.59■■□□□ 1.85
CTCFP49711 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
CTCFP49711 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC26.59■■□□□ 1.85
CTCFP49711 BID-214ENST00000617586 542 ntTSL 5 BASIC26.59■■□□□ 1.85
CTCFP49711 IGHV3-19-201ENST00000521488 291 ntBASIC26.58■■□□□ 1.85
CTCFP49711 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
CTCFP49711 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
CTCFP49711 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms