Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PTPN9P43378 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC23.78■■□□□ 1.4
PTPN9P43378 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PTPN9P43378 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC23.77■■□□□ 1.4
PTPN9P43378 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC23.77■■□□□ 1.4
PTPN9P43378 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
PTPN9P43378 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
PTPN9P43378 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
PTPN9P43378 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC23.77■■□□□ 1.4
PTPN9P43378 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
PTPN9P43378 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC23.77■■□□□ 1.4
PTPN9P43378 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
PTPN9P43378 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PTPN9P43378 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
PTPN9P43378 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
PTPN9P43378 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC23.76■■□□□ 1.39
PTPN9P43378 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC23.76■■□□□ 1.39
PTPN9P43378 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC23.76■■□□□ 1.39
PTPN9P43378 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC23.76■■□□□ 1.39
PTPN9P43378 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
PTPN9P43378 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC23.76■■□□□ 1.39
PTPN9P43378 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
PTPN9P43378 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC23.76■■□□□ 1.39
PTPN9P43378 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PTPN9P43378 REST-206ENST00000612429 1376 ntTSL 5 BASIC23.76■■□□□ 1.39
PTPN9P43378 REST-207ENST00000616975 1370 ntTSL 5 BASIC23.76■■□□□ 1.39
PTPN9P43378 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
PTPN9P43378 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PTPN9P43378 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PTPN9P43378 OR2A1-AS1-204ENST00000470435 602 ntBASIC23.75■■□□□ 1.39
PTPN9P43378 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
PTPN9P43378 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
PTPN9P43378 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PTPN9P43378 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PTPN9P43378 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
PTPN9P43378 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
PTPN9P43378 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC23.74■■□□□ 1.39
PTPN9P43378 HES6-204ENST00000409182 863 ntTSL 2 BASIC23.74■■□□□ 1.39
PTPN9P43378 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
PTPN9P43378 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC23.74■■□□□ 1.39
PTPN9P43378 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
PTPN9P43378 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC23.74■■□□□ 1.39
PTPN9P43378 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
PTPN9P43378 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
PTPN9P43378 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC23.73■■□□□ 1.39
PTPN9P43378 CLTA-206ENST00000466396 695 ntTSL 2 BASIC23.73■■□□□ 1.39
PTPN9P43378 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC23.73■■□□□ 1.39
PTPN9P43378 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
PTPN9P43378 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
PTPN9P43378 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
PTPN9P43378 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PTPN9P43378 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC23.72■■□□□ 1.39
PTPN9P43378 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
PTPN9P43378 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PTPN9P43378 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC23.72■■□□□ 1.39
PTPN9P43378 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC23.72■■□□□ 1.39
PTPN9P43378 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC23.71■■□□□ 1.39
PTPN9P43378 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PTPN9P43378 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PTPN9P43378 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PTPN9P43378 CREM-229ENST00000474362 1030 ntTSL 2 BASIC23.71■■□□□ 1.39
PTPN9P43378 MTDHP2-201ENST00000601468 714 ntBASIC23.71■■□□□ 1.39
PTPN9P43378 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PTPN9P43378 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
PTPN9P43378 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC23.7■■□□□ 1.39
PTPN9P43378 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
PTPN9P43378 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
PTPN9P43378 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
PTPN9P43378 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
PTPN9P43378 TRIR-205ENST00000592273 783 ntTSL 3 BASIC23.7■■□□□ 1.38
PTPN9P43378 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
PTPN9P43378 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
PTPN9P43378 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
PTPN9P43378 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
PTPN9P43378 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
PTPN9P43378 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
PTPN9P43378 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC23.69■■□□□ 1.38
PTPN9P43378 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
PTPN9P43378 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
PTPN9P43378 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC23.69■■□□□ 1.38
PTPN9P43378 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC23.69■■□□□ 1.38
PTPN9P43378 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
PTPN9P43378 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC23.69■■□□□ 1.38
PTPN9P43378 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
PTPN9P43378 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
PTPN9P43378 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC23.68■■□□□ 1.38
PTPN9P43378 AC005703.6-201ENST00000623265 1329 ntBASIC23.68■■□□□ 1.38
PTPN9P43378 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
PTPN9P43378 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
PTPN9P43378 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
PTPN9P43378 UNC93B8-201ENST00000511903 705 ntBASIC23.68■■□□□ 1.38
PTPN9P43378 AC010997.5-201ENST00000609182 354 ntBASIC23.68■■□□□ 1.38
PTPN9P43378 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
PTPN9P43378 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC23.68■■□□□ 1.38
PTPN9P43378 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC23.68■■□□□ 1.38
PTPN9P43378 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
PTPN9P43378 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC23.67■■□□□ 1.38
PTPN9P43378 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC23.67■■□□□ 1.38
PTPN9P43378 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
PTPN9P43378 USF2-207ENST00000595068 1612 ntTSL 5 BASIC23.67■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms