Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
SHMT1P34896 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC26.9■■□□□ 1.9
SHMT1P34896 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC26.89■■□□□ 1.9
SHMT1P34896 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
SHMT1P34896 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC26.89■■□□□ 1.9
SHMT1P34896 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
SHMT1P34896 AC099791.2-201ENST00000605725 427 ntBASIC26.89■■□□□ 1.9
SHMT1P34896 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC26.89■■□□□ 1.89
SHMT1P34896 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC26.89■■□□□ 1.89
SHMT1P34896 TMEM202-AS1-202ENST00000565181 2325 ntBASIC26.89■■□□□ 1.89
SHMT1P34896 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC26.89■■□□□ 1.89
SHMT1P34896 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC26.89■■□□□ 1.89
SHMT1P34896 MED17-227ENST00000640521 2047 ntTSL 5 BASIC26.89■■□□□ 1.89
SHMT1P34896 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
SHMT1P34896 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
SHMT1P34896 USF2-207ENST00000595068 1612 ntTSL 5 BASIC26.88■■□□□ 1.89
SHMT1P34896 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
SHMT1P34896 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
SHMT1P34896 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
SHMT1P34896 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC26.88■■□□□ 1.89
SHMT1P34896 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC26.88■■□□□ 1.89
SHMT1P34896 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC26.87■■□□□ 1.89
SHMT1P34896 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
SHMT1P34896 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC26.87■■□□□ 1.89
SHMT1P34896 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
SHMT1P34896 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC26.87■■□□□ 1.89
SHMT1P34896 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
SHMT1P34896 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
SHMT1P34896 EBPL-204ENST00000378272 766 ntTSL 3 BASIC26.87■■□□□ 1.89
SHMT1P34896 DUX4L19-201ENST00000557448 1267 ntBASIC26.87■■□□□ 1.89
SHMT1P34896 AC142381.2-201ENST00000566120 298 ntBASIC26.87■■□□□ 1.89
SHMT1P34896 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
SHMT1P34896 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC26.87■■□□□ 1.89
SHMT1P34896 ALDH1A3-203ENST00000557963 1670 ntBASIC26.86■■□□□ 1.89
SHMT1P34896 AC142381.3-201ENST00000568208 1670 ntBASIC26.86■■□□□ 1.89
SHMT1P34896 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
SHMT1P34896 EDA-201ENST00000338901 1233 ntBASIC26.86■■□□□ 1.89
SHMT1P34896 SERBP1P1-201ENST00000396021 1160 ntBASIC26.86■■□□□ 1.89
SHMT1P34896 SF1-220ENST00000626028 704 ntTSL 2 BASIC26.86■■□□□ 1.89
SHMT1P34896 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC26.86■■□□□ 1.89
SHMT1P34896 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC26.86■■□□□ 1.89
SHMT1P34896 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
SHMT1P34896 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC26.85■■□□□ 1.89
SHMT1P34896 SYT6-210ENST00000641643 1587 ntBASIC26.85■■□□□ 1.89
SHMT1P34896 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC26.85■■□□□ 1.89
SHMT1P34896 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC26.85■■□□□ 1.89
SHMT1P34896 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
SHMT1P34896 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
SHMT1P34896 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC26.85■■□□□ 1.89
SHMT1P34896 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
SHMT1P34896 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
SHMT1P34896 EI24-204ENST00000527235 1625 ntTSL 5 BASIC26.84■■□□□ 1.89
SHMT1P34896 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
SHMT1P34896 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC26.84■■□□□ 1.89
SHMT1P34896 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC26.84■■□□□ 1.89
SHMT1P34896 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC26.84■■□□□ 1.89
SHMT1P34896 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
SHMT1P34896 ZNRF2P3-201ENST00000424200 374 ntBASIC26.83■■□□□ 1.89
SHMT1P34896 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC26.83■■□□□ 1.89
SHMT1P34896 AL355001.2-201ENST00000620617 1191 ntBASIC26.83■■□□□ 1.89
SHMT1P34896 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC26.83■■□□□ 1.89
SHMT1P34896 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
SHMT1P34896 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC26.83■■□□□ 1.88
SHMT1P34896 AC020928.2-201ENST00000588717 2197 ntBASIC26.82■■□□□ 1.88
SHMT1P34896 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
SHMT1P34896 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC26.82■■□□□ 1.88
SHMT1P34896 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
SHMT1P34896 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC26.82■■□□□ 1.88
SHMT1P34896 AC092171.4-201ENST00000609130 632 ntBASIC26.82■■□□□ 1.88
SHMT1P34896 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC26.82■■□□□ 1.88
SHMT1P34896 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC26.82■■□□□ 1.88
SHMT1P34896 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC26.82■■□□□ 1.88
SHMT1P34896 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
SHMT1P34896 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
SHMT1P34896 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
SHMT1P34896 PTCHD3P2-201ENST00000424937 1205 ntBASIC26.81■■□□□ 1.88
SHMT1P34896 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC26.81■■□□□ 1.88
SHMT1P34896 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
SHMT1P34896 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
SHMT1P34896 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
SHMT1P34896 SHF-207ENST00000560540 2062 ntTSL 5 BASIC26.8■■□□□ 1.88
SHMT1P34896 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC26.8■■□□□ 1.88
SHMT1P34896 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
SHMT1P34896 AC006455.2-201ENST00000429931 906 ntBASIC26.8■■□□□ 1.88
SHMT1P34896 MIR4767-201ENST00000582827 78 ntBASIC26.8■■□□□ 1.88
SHMT1P34896 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC26.8■■□□□ 1.88
SHMT1P34896 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
SHMT1P34896 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
SHMT1P34896 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
SHMT1P34896 GRAMD4P4-201ENST00000613563 1115 ntBASIC26.79■■□□□ 1.88
SHMT1P34896 AL136967.2-201ENST00000623968 743 ntBASIC26.79■■□□□ 1.88
SHMT1P34896 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
SHMT1P34896 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC26.79■■□□□ 1.88
SHMT1P34896 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC26.79■■□□□ 1.88
SHMT1P34896 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC26.79■■□□□ 1.88
SHMT1P34896 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC26.78■■□□□ 1.88
SHMT1P34896 PTMA-205ENST00000410064 814 ntTSL 2 BASIC26.78■■□□□ 1.88
SHMT1P34896 AP001330.3-201ENST00000520123 633 ntBASIC26.78■■□□□ 1.88
SHMT1P34896 AF213884.3-201ENST00000563833 479 ntBASIC26.78■■□□□ 1.88
SHMT1P34896 NKILA-201ENST00000613231 537 ntTSL 4 BASIC26.78■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms