Protein–RNA interactions for Protein: P00558

PGK1, Phosphoglycerate kinase 1, humanhuman

Predictions only

Length 417 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1P00558 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
PGK1P00558 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC25.59■■□□□ 1.69
PGK1P00558 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC25.59■■□□□ 1.69
PGK1P00558 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC25.59■■□□□ 1.69
PGK1P00558 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
PGK1P00558 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC25.59■■□□□ 1.69
PGK1P00558 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
PGK1P00558 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
PGK1P00558 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
PGK1P00558 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC25.58■■□□□ 1.69
PGK1P00558 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
PGK1P00558 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
PGK1P00558 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
PGK1P00558 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
PGK1P00558 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
PGK1P00558 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC25.58■■□□□ 1.69
PGK1P00558 IKBKGP1-201ENST00000612193 1073 ntBASIC25.58■■□□□ 1.69
PGK1P00558 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
PGK1P00558 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC25.58■■□□□ 1.68
PGK1P00558 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC25.57■■□□□ 1.68
PGK1P00558 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC25.57■■□□□ 1.68
PGK1P00558 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC25.57■■□□□ 1.68
PGK1P00558 MIR6089-201ENST00000616698 64 ntBASIC25.57■■□□□ 1.68
PGK1P00558 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC25.57■■□□□ 1.68
PGK1P00558 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
PGK1P00558 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC25.56■■□□□ 1.68
PGK1P00558 AK1-201ENST00000223836 736 ntTSL 3 BASIC25.56■■□□□ 1.68
PGK1P00558 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
PGK1P00558 ASB1-202ENST00000409297 878 ntTSL 5 BASIC25.56■■□□□ 1.68
PGK1P00558 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC25.56■■□□□ 1.68
PGK1P00558 NKILA-201ENST00000613231 537 ntTSL 4 BASIC25.56■■□□□ 1.68
PGK1P00558 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC25.56■■□□□ 1.68
PGK1P00558 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
PGK1P00558 HACD1-201ENST00000326961 773 ntTSL 2 BASIC25.55■■□□□ 1.68
PGK1P00558 AC090192.1-201ENST00000517740 490 ntBASIC25.55■■□□□ 1.68
PGK1P00558 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
PGK1P00558 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
PGK1P00558 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC25.55■■□□□ 1.68
PGK1P00558 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
PGK1P00558 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC25.54■■□□□ 1.68
PGK1P00558 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
PGK1P00558 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC25.54■■□□□ 1.68
PGK1P00558 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
PGK1P00558 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
PGK1P00558 RARRES2P11-201ENST00000635158 484 ntBASIC25.54■■□□□ 1.68
PGK1P00558 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
PGK1P00558 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC25.54■■□□□ 1.68
PGK1P00558 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC25.53■■□□□ 1.68
PGK1P00558 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC25.53■■□□□ 1.68
PGK1P00558 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC25.53■■□□□ 1.68
PGK1P00558 VGF-203ENST00000611537 1622 ntTSL 5 BASIC25.53■■□□□ 1.68
PGK1P00558 SNX3-202ENST00000349379 890 ntTSL 2 BASIC25.53■■□□□ 1.68
PGK1P00558 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC25.53■■□□□ 1.68
PGK1P00558 AC034268.1-201ENST00000441047 882 ntBASIC25.53■■□□□ 1.68
PGK1P00558 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC25.53■■□□□ 1.68
PGK1P00558 AC022517.1-201ENST00000592429 346 ntBASIC25.53■■□□□ 1.68
PGK1P00558 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC25.53■■□□□ 1.68
PGK1P00558 AL031602.1-201ENST00000633169 911 ntBASIC25.53■■□□□ 1.68
PGK1P00558 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC25.53■■□□□ 1.68
PGK1P00558 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
PGK1P00558 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC25.52■■□□□ 1.68
PGK1P00558 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
PGK1P00558 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
PGK1P00558 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
PGK1P00558 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC25.52■■□□□ 1.68
PGK1P00558 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
PGK1P00558 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC25.52■■□□□ 1.68
PGK1P00558 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC25.52■■□□□ 1.68
PGK1P00558 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC25.52■■□□□ 1.68
PGK1P00558 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC25.52■■□□□ 1.68
PGK1P00558 LSR-205ENST00000427250 1606 ntTSL 2 BASIC25.52■■□□□ 1.68
PGK1P00558 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
PGK1P00558 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
PGK1P00558 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
PGK1P00558 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC25.51■■□□□ 1.67
PGK1P00558 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC25.51■■□□□ 1.67
PGK1P00558 AC126544.1-201ENST00000580842 1059 ntBASIC25.51■■□□□ 1.67
PGK1P00558 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC25.51■■□□□ 1.67
PGK1P00558 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
PGK1P00558 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
PGK1P00558 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC25.5■■□□□ 1.67
PGK1P00558 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC25.5■■□□□ 1.67
PGK1P00558 pRNA.6-201ENST00000610482 90 ntBASIC25.5■■□□□ 1.67
PGK1P00558 pRNA.5-201ENST00000612139 90 ntBASIC25.5■■□□□ 1.67
PGK1P00558 pRNA.11-201ENST00000618423 90 ntBASIC25.5■■□□□ 1.67
PGK1P00558 pRNA.13-201ENST00000619112 90 ntBASIC25.5■■□□□ 1.67
PGK1P00558 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC25.5■■□□□ 1.67
PGK1P00558 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC25.5■■□□□ 1.67
PGK1P00558 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
PGK1P00558 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
PGK1P00558 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC25.49■■□□□ 1.67
PGK1P00558 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC25.49■■□□□ 1.67
PGK1P00558 KRT18P5-201ENST00000436075 1291 ntBASIC25.49■■□□□ 1.67
PGK1P00558 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC25.49■■□□□ 1.67
PGK1P00558 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC25.49■■□□□ 1.67
PGK1P00558 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC25.49■■□□□ 1.67
PGK1P00558 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
PGK1P00558 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
PGK1P00558 AL121749.1-202ENST00000609313 2153 ntBASIC25.49■■□□□ 1.67
PGK1P00558 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC25.49■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms