Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 CAPN15-207ENST00000568988 911 ntTSL 323.99■■□□□ 1.431e-6■■■■□ 23.6
SMNDC1O75940 CAPN15-202ENST00000562370 942 ntTSL 223.99■■□□□ 1.431e-6■■■■□ 23.6
SMNDC1O75940 USP42-202ENST00000404008 1380 ntTSL 226.02■■□□□ 1.761e-6■■■■□ 23.6
SMNDC1O75940 CYC1-204ENST00000533444 1832 ntTSL 1 (best)25.99■■□□□ 1.751e-6■■■■□ 23.6
SMNDC1O75940 USP42-204ENST00000451154 520 ntTSL 524.49■■□□□ 1.511e-6■■■■□ 23.6
SMNDC1O75940 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.251e-6■■■■□ 23.6
SMNDC1O75940 CRTC2-201ENST00000303569 2290 ntTSL 522.45■■□□□ 1.181e-6■■■■□ 23.6
SMNDC1O75940 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.09■□□□□ 0.971e-6■■■■□ 23.6
SMNDC1O75940 GLG1-213ENST00000567951 2918 ntTSL 1 (best)20.9■□□□□ 0.941e-6■■■■□ 23.6
SMNDC1O75940 USP42-205ENST00000465073 1490 ntTSL 520.58■□□□□ 0.891e-6■■■■□ 23.6
SMNDC1O75940 PELP1-205ENST00000570823 484 ntTSL 420.33■□□□□ 0.851e-6■■■■□ 23.6
SMNDC1O75940 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.731e-6■■■■□ 23.6
SMNDC1O75940 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC19.6■□□□□ 0.734e-9■■■■□ 23.6
SMNDC1O75940 PARP12-205ENST00000473341 2861 ntTSL 1 (best)19.37■□□□□ 0.691e-6■■■■□ 23.6
SMNDC1O75940 PELP1-207ENST00000571347 708 ntTSL 218.87■□□□□ 0.611e-6■■■■□ 23.6
SMNDC1O75940 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.571e-6■■■■□ 23.6
SMNDC1O75940 MAEA-206ENST00000503693 1182 ntTSL 1 (best)17.46■□□□□ 0.391e-6■■■■□ 23.6
SMNDC1O75940 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC17.27■□□□□ 0.361e-6■■■■□ 23.6
SMNDC1O75940 PELP1-213ENST00000575101 442 ntTSL 317.1■□□□□ 0.331e-6■■■■□ 23.6
SMNDC1O75940 AQP4-AS1-203ENST00000579964 471 ntTSL 516.81■□□□□ 0.281e-6■■■■□ 23.6
SMNDC1O75940 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC16.8■□□□□ 0.281e-6■■■■□ 23.6
SMNDC1O75940 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.261e-6■■■■□ 23.6
SMNDC1O75940 PELP1-214ENST00000575329 3280 ntTSL 216.63■□□□□ 0.251e-6■■■■□ 23.6
SMNDC1O75940 CYC1-203ENST00000528618 831 ntTSL 516.52■□□□□ 0.241e-6■■■■□ 23.6
SMNDC1O75940 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.221e-6■■■■□ 23.6
SMNDC1O75940 USP42-207ENST00000521713 5017 ntTSL 516.26■□□□□ 0.191e-6■■■■□ 23.6
SMNDC1O75940 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.194e-9■■■■□ 23.6
SMNDC1O75940 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.171e-6■■■■□ 23.6
SMNDC1O75940 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.11e-6■■■■□ 23.6
SMNDC1O75940 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.071e-6■■■■□ 23.6
SMNDC1O75940 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.051e-6■■■■□ 23.6
SMNDC1O75940 ANKRD11-213ENST00000567736 2750 ntTSL 215.3■□□□□ 0.041e-6■■■■□ 23.6
SMNDC1O75940 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.011e-6■■■■□ 23.6
SMNDC1O75940 RUBCNL-201ENST00000378781 3322 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 04e-9■■■■□ 23.6
SMNDC1O75940 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC15.02□□□□□ -0.011e-6■■■■□ 23.6
SMNDC1O75940 TSC2-217ENST00000561695 555 ntTSL 214.94□□□□□ -0.021e-6■■■■□ 23.6
SMNDC1O75940 PELP1-204ENST00000570571 902 ntTSL 314.71□□□□□ -0.051e-6■■■■□ 23.6
SMNDC1O75940 PELP1-201ENST00000301396 3673 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.061e-6■■■■□ 23.6
SMNDC1O75940 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.061e-6■■■■□ 23.6
SMNDC1O75940 GLG1-206ENST00000562090 4037 ntTSL 214.6□□□□□ -0.071e-6■■■■□ 23.6
SMNDC1O75940 KDM4B-212ENST00000624683 5076 nt14.6□□□□□ -0.077e-8■■■■□ 23.6
SMNDC1O75940 CRTC2-207ENST00000487235 2263 ntTSL 214.5□□□□□ -0.091e-6■■■■□ 23.6
SMNDC1O75940 PELP1-211ENST00000573523 3878 ntTSL 214.38□□□□□ -0.111e-6■■■■□ 23.6
SMNDC1O75940 MAEA-211ENST00000509254 598 ntTSL 414.38□□□□□ -0.111e-6■■■■□ 23.6
SMNDC1O75940 ANKRD11-210ENST00000566858 580 ntTSL 414.37□□□□□ -0.111e-6■■■■□ 23.6
SMNDC1O75940 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC14.24□□□□□ -0.131e-6■■■■□ 23.6
SMNDC1O75940 USP42-206ENST00000479544 4286 ntTSL 1 (best)14.09□□□□□ -0.151e-6■■■■□ 23.6
SMNDC1O75940 ANKRD11-212ENST00000567699 412 ntTSL 513.51□□□□□ -0.251e-6■■■■□ 23.6
SMNDC1O75940 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.264e-9■■■■□ 23.6
SMNDC1O75940 GRB10-217ENST00000473696 1065 ntTSL 413.14□□□□□ -0.311e-6■■■■□ 23.6
SMNDC1O75940 DIP2A-208ENST00000478105 3234 ntTSL 213.11□□□□□ -0.311e-6■■■■□ 23.6
SMNDC1O75940 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC12.87□□□□□ -0.351e-6■■■■□ 23.6
SMNDC1O75940 PITPNB-204ENST00000436663 590 ntTSL 212.67□□□□□ -0.381e-6■■■■□ 23.6
SMNDC1O75940 PARP12-207ENST00000488726 2574 ntTSL 512.58□□□□□ -0.41e-6■■■■□ 23.6
SMNDC1O75940 CRTC2-204ENST00000461638 2343 ntTSL 1 (best)12.5□□□□□ -0.411e-6■■■■□ 23.6
SMNDC1O75940 PARP12-209ENST00000489809 915 ntTSL 312.41□□□□□ -0.421e-6■■■■□ 23.6
SMNDC1O75940 RUBCNL-208ENST00000429979 3979 ntAPPRIS P3 TSL 5 BASIC12.31□□□□□ -0.444e-9■■■■□ 23.6
SMNDC1O75940 ANKRD11-216ENST00000568924 587 ntTSL 412.31□□□□□ -0.441e-6■■■■□ 23.6
SMNDC1O75940 PITPNB-201ENST00000320996 2826 ntAPPRIS ALT1 TSL 1 (best) BASIC11.79□□□□□ -0.521e-6■■■■□ 23.6
SMNDC1O75940 GLG1-211ENST00000566601 2536 ntTSL 210.98□□□□□ -0.651e-6■■■■□ 23.6
SMNDC1O75940 PARP12-210ENST00000491598 874 ntTSL 310.73□□□□□ -0.691e-6■■■■□ 23.6
SMNDC1O75940 GRB10-219ENST00000482397 575 ntTSL 410.63□□□□□ -0.711e-6■■■■□ 23.6
SMNDC1O75940 GLG1-207ENST00000563432 555 ntTSL 310.61□□□□□ -0.711e-6■■■■□ 23.6
SMNDC1O75940 DIP2A-202ENST00000417564 6967 ntAPPRIS P3 TSL 1 (best) BASIC10.39□□□□□ -0.751e-6■■■■□ 23.6
SMNDC1O75940 CRTC2-205ENST00000467860 573 ntTSL 310.38□□□□□ -0.751e-6■■■■□ 23.6
SMNDC1O75940 RUBCNL-206ENST00000409879 2997 ntAPPRIS ALT2 TSL 2 BASIC10.19□□□□□ -0.784e-9■■■■□ 23.6
SMNDC1O75940 PELP1-206ENST00000571170 555 ntTSL 29.84□□□□□ -0.831e-6■■■■□ 23.6
SMNDC1O75940 PITPNB-203ENST00000415296 884 ntTSL 39.75□□□□□ -0.851e-6■■■■□ 23.6
SMNDC1O75940 AMD1-202ENST00000368877 1605 ntTSL 2 BASIC9.2□□□□□ -0.941e-6■■■■□ 23.6
SMNDC1O75940 RUBCNL-207ENST00000417405 494 ntTSL 39.19□□□□□ -0.944e-9■■■■□ 23.6
SMNDC1O75940 RUBCNL-202ENST00000378784 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC8.87□□□□□ -0.994e-9■■■■□ 23.6
SMNDC1O75940 PPIH-206ENST00000461351 527 ntTSL 38.72□□□□□ -1.011e-6■■■■□ 23.6
SMNDC1O75940 PITPNB-209ENST00000477861 786 ntTSL 58.67□□□□□ -1.021e-6■■■■□ 23.6
SMNDC1O75940 PELP1-203ENST00000570387 567 ntTSL 58.07□□□□□ -1.121e-6■■■■□ 23.6
SMNDC1O75940 RUBCNL-210ENST00000441284 2754 ntTSL 57.92□□□□□ -1.144e-9■■■■□ 23.6
SMNDC1O75940 AMD1-201ENST00000368876 3040 ntTSL 5 BASIC7.66□□□□□ -1.181e-6■■■■□ 23.6
SMNDC1O75940 PPIH-201ENST00000304979 752 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.251e-6■■■■□ 23.6
SMNDC1O75940 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC7.24□□□□□ -1.251e-6■■■■□ 23.6
SMNDC1O75940 AMD1-207ENST00000612642 4745 ntTSL 1 (best)7.21□□□□□ -1.261e-6■■■■□ 23.6
SMNDC1O75940 AMD1-206ENST00000465404 782 ntTSL 57.09□□□□□ -1.271e-6■■■■□ 23.6
SMNDC1O75940 RUBCNL-209ENST00000439642 972 ntTSL 27.04□□□□□ -1.284e-9■■■■□ 23.6
SMNDC1O75940 AMD1-205ENST00000451850 3121 ntTSL 1 (best)6.8□□□□□ -1.321e-6■■■■□ 23.6
SMNDC1O75940 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.391e-6■■■■□ 23.6
SMNDC1O75940 RNU2-6P-201ENST00000411404 190 ntBASIC6.22□□□□□ -1.414e-9■■■■□ 23.6
SMNDC1O75940 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC6.08□□□□□ -1.444e-9■■■■□ 23.6
SMNDC1O75940 AMD1-208ENST00000619590 4329 ntTSL 25.98□□□□□ -1.451e-6■■■■□ 23.6
SMNDC1O75940 RNU6-1035P-201ENST00000384477 107 ntBASIC4.38□□□□□ -1.711e-6■■■■□ 23.6
SMNDC1O75940 CRTC2-209ENST00000493909 207 ntTSL 20.64□□□□□ -2.311e-6■■■■□ 23.6
SMNDC1O75940 OPLAH-202ENST00000531027 500 ntTSL 212.76□□□□□ -0.371e-6■■■■□ 23.5
SMNDC1O75940 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.542e-6■■■■□ 23.5
SMNDC1O75940 RBM17-210ENST00000476706 927 ntTSL 29.71□□□□□ -0.862e-6■■■■□ 23.5
SMNDC1O75940 RBM17-207ENST00000465906 914 ntTSL 29.69□□□□□ -0.862e-6■■■■□ 23.5
SMNDC1O75940 RBM17-205ENST00000446108 3751 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.952e-6■■■■□ 23.5
SMNDC1O75940 SNORA74A-201ENST00000364089 198 ntBASIC4.89□□□□□ -1.631e-323■■■■□ 23.5
SMNDC1O75940 INTS1-202ENST00000468115 3051 ntTSL 215.86■□□□□ 0.135e-6■■■■□ 23.5
SMNDC1O75940 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.371e-6■■■■□ 23.5
SMNDC1O75940 RPL23A-209ENST00000582736 595 ntTSL 1 (best)13.2□□□□□ -0.31e-323■■■■□ 23.5
SMNDC1O75940 SNORD42B-201ENST00000458893 67 ntBASIC1.34□□□□□ -2.191e-323■■■■□ 23.5
SMNDC1O75940 ADARB1-208ENST00000462214 587 ntTSL 37.79□□□□□ -1.163e-7■■■■□ 23.4
SMNDC1O75940 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.06■□□□□ 0.162e-31■■■■□ 23.4
Retrieved 100 of 11,362 protein–RNA pairs in 399.3 ms