Protein–RNA interactions for Protein: O60885

BRD4, Bromodomain-containing protein 4, humanhuman

Predicted RBP Predictions only

Length 1,362 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRD4O60885 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
BRD4O60885 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
BRD4O60885 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
BRD4O60885 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
BRD4O60885 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC31.7■■■□□ 2.67
BRD4O60885 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
BRD4O60885 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
BRD4O60885 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
BRD4O60885 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
BRD4O60885 AC026271.2-201ENST00000428091 497 ntBASIC31.69■■■□□ 2.66
BRD4O60885 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC31.69■■■□□ 2.66
BRD4O60885 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC31.69■■■□□ 2.66
BRD4O60885 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
BRD4O60885 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC31.68■■■□□ 2.66
BRD4O60885 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC31.68■■■□□ 2.66
BRD4O60885 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC31.68■■■□□ 2.66
BRD4O60885 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC31.68■■■□□ 2.66
BRD4O60885 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC31.68■■■□□ 2.66
BRD4O60885 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
BRD4O60885 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC31.68■■■□□ 2.66
BRD4O60885 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC31.68■■■□□ 2.66
BRD4O60885 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC31.67■■■□□ 2.66
BRD4O60885 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
BRD4O60885 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC31.67■■■□□ 2.66
BRD4O60885 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC31.67■■■□□ 2.66
BRD4O60885 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
BRD4O60885 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
BRD4O60885 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC31.66■■■□□ 2.66
BRD4O60885 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
BRD4O60885 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
BRD4O60885 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
BRD4O60885 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC31.66■■■□□ 2.66
BRD4O60885 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
BRD4O60885 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC31.66■■■□□ 2.66
BRD4O60885 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC31.66■■■□□ 2.66
BRD4O60885 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC31.65■■■□□ 2.66
BRD4O60885 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
BRD4O60885 MIR939-201ENST00000401314 82 ntBASIC31.65■■■□□ 2.66
BRD4O60885 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC31.65■■■□□ 2.66
BRD4O60885 AC092171.4-201ENST00000609130 632 ntBASIC31.65■■■□□ 2.66
BRD4O60885 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
BRD4O60885 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
BRD4O60885 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC31.65■■■□□ 2.66
BRD4O60885 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
BRD4O60885 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
BRD4O60885 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
BRD4O60885 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
BRD4O60885 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
BRD4O60885 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
BRD4O60885 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC31.64■■■□□ 2.66
BRD4O60885 AC131274.2-201ENST00000580697 1507 ntBASIC31.64■■■□□ 2.66
BRD4O60885 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
BRD4O60885 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
BRD4O60885 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC31.63■■■□□ 2.65
BRD4O60885 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC31.63■■■□□ 2.65
BRD4O60885 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
BRD4O60885 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
BRD4O60885 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
BRD4O60885 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
BRD4O60885 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
BRD4O60885 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC31.62■■■□□ 2.65
BRD4O60885 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
BRD4O60885 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC31.62■■■□□ 2.65
BRD4O60885 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC31.62■■■□□ 2.65
BRD4O60885 AL136967.2-201ENST00000623968 743 ntBASIC31.62■■■□□ 2.65
BRD4O60885 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC31.62■■■□□ 2.65
BRD4O60885 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
BRD4O60885 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC31.62■■■□□ 2.65
BRD4O60885 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC31.62■■■□□ 2.65
BRD4O60885 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC31.62■■■□□ 2.65
BRD4O60885 LINC01124-201ENST00000409786 2117 ntBASIC31.61■■■□□ 2.65
BRD4O60885 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
BRD4O60885 AP001330.3-201ENST00000520123 633 ntBASIC31.61■■■□□ 2.65
BRD4O60885 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC31.61■■■□□ 2.65
BRD4O60885 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
BRD4O60885 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC31.6■■■□□ 2.65
BRD4O60885 STK32C-205ENST00000456004 607 ntTSL 2 BASIC31.6■■■□□ 2.65
BRD4O60885 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
BRD4O60885 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
BRD4O60885 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC31.6■■■□□ 2.65
BRD4O60885 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC31.6■■■□□ 2.65
BRD4O60885 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC31.6■■■□□ 2.65
BRD4O60885 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC31.59■■■□□ 2.65
BRD4O60885 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC31.59■■■□□ 2.65
BRD4O60885 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
BRD4O60885 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC31.59■■■□□ 2.65
BRD4O60885 LGR4-203ENST00000480977 492 ntTSL 2 BASIC31.59■■■□□ 2.65
BRD4O60885 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC31.59■■■□□ 2.65
BRD4O60885 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
BRD4O60885 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
BRD4O60885 REST-206ENST00000612429 1376 ntTSL 5 BASIC31.59■■■□□ 2.65
BRD4O60885 REST-207ENST00000616975 1370 ntTSL 5 BASIC31.59■■■□□ 2.65
BRD4O60885 LINC00543-201ENST00000567234 1845 ntBASIC31.59■■■□□ 2.65
BRD4O60885 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC31.59■■■□□ 2.65
BRD4O60885 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC31.58■■■□□ 2.65
BRD4O60885 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC31.58■■■□□ 2.65
BRD4O60885 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC31.58■■■□□ 2.65
BRD4O60885 AF213884.3-201ENST00000563833 479 ntBASIC31.58■■■□□ 2.65
BRD4O60885 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC31.58■■■□□ 2.65
BRD4O60885 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC31.58■■■□□ 2.65
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms