Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC22.42■■□□□ 1.18
TRIM13O60858 AL022069.1-201ENST00000568025 1636 ntBASIC22.42■■□□□ 1.18
TRIM13O60858 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
TRIM13O60858 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
TRIM13O60858 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC22.41■■□□□ 1.18
TRIM13O60858 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
TRIM13O60858 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
TRIM13O60858 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC22.41■■□□□ 1.18
TRIM13O60858 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
TRIM13O60858 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
TRIM13O60858 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
TRIM13O60858 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC22.41■■□□□ 1.18
TRIM13O60858 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
TRIM13O60858 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
TRIM13O60858 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
TRIM13O60858 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
TRIM13O60858 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
TRIM13O60858 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC22.4■■□□□ 1.18
TRIM13O60858 MBP-237ENST00000579129 1052 ntTSL 5 BASIC22.4■■□□□ 1.18
TRIM13O60858 MIR6765-201ENST00000614092 87 ntBASIC22.4■■□□□ 1.18
TRIM13O60858 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC22.4■■□□□ 1.18
TRIM13O60858 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
TRIM13O60858 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC22.4■■□□□ 1.18
TRIM13O60858 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
TRIM13O60858 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC22.4■■□□□ 1.18
TRIM13O60858 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
TRIM13O60858 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
TRIM13O60858 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
TRIM13O60858 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC22.39■■□□□ 1.18
TRIM13O60858 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
TRIM13O60858 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
TRIM13O60858 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
TRIM13O60858 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
TRIM13O60858 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.17
TRIM13O60858 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
TRIM13O60858 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
TRIM13O60858 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
TRIM13O60858 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC22.39■■□□□ 1.17
TRIM13O60858 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC22.39■■□□□ 1.17
TRIM13O60858 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
TRIM13O60858 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
TRIM13O60858 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
TRIM13O60858 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC22.38■■□□□ 1.17
TRIM13O60858 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC22.38■■□□□ 1.17
TRIM13O60858 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC22.38■■□□□ 1.17
TRIM13O60858 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
TRIM13O60858 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC22.38■■□□□ 1.17
TRIM13O60858 C1orf229-201ENST00000623686 2258 ntBASIC22.38■■□□□ 1.17
TRIM13O60858 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
TRIM13O60858 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC22.38■■□□□ 1.17
TRIM13O60858 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
TRIM13O60858 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC22.37■■□□□ 1.17
TRIM13O60858 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC22.37■■□□□ 1.17
TRIM13O60858 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC22.37■■□□□ 1.17
TRIM13O60858 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
TRIM13O60858 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC22.37■■□□□ 1.17
TRIM13O60858 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC22.37■■□□□ 1.17
TRIM13O60858 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
TRIM13O60858 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
TRIM13O60858 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
TRIM13O60858 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC22.36■■□□□ 1.17
TRIM13O60858 H19-210ENST00000439725 1929 ntTSL 2 BASIC22.36■■□□□ 1.17
TRIM13O60858 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
TRIM13O60858 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
TRIM13O60858 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC22.36■■□□□ 1.17
TRIM13O60858 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TRIM13O60858 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
TRIM13O60858 HYI-213ENST00000583037 1322 ntTSL 5 BASIC22.35■■□□□ 1.17
TRIM13O60858 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TRIM13O60858 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
TRIM13O60858 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TRIM13O60858 LONRF2P2-201ENST00000439212 571 ntBASIC22.35■■□□□ 1.17
TRIM13O60858 DUX4L9-201ENST00000449051 1259 ntBASIC22.35■■□□□ 1.17
TRIM13O60858 ABHD17AP3-201ENST00000503096 1137 ntBASIC22.35■■□□□ 1.17
TRIM13O60858 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC22.35■■□□□ 1.17
TRIM13O60858 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TRIM13O60858 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TRIM13O60858 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
TRIM13O60858 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TRIM13O60858 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC22.35■■□□□ 1.17
TRIM13O60858 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC22.35■■□□□ 1.17
TRIM13O60858 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
TRIM13O60858 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
TRIM13O60858 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
TRIM13O60858 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
TRIM13O60858 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC22.34■■□□□ 1.17
TRIM13O60858 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
TRIM13O60858 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC22.34■■□□□ 1.17
TRIM13O60858 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
TRIM13O60858 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC22.33■■□□□ 1.17
TRIM13O60858 EP400NL-214ENST00000641289 2402 ntBASIC22.33■■□□□ 1.17
TRIM13O60858 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC22.33■■□□□ 1.16
TRIM13O60858 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC22.33■■□□□ 1.16
TRIM13O60858 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC22.33■■□□□ 1.16
TRIM13O60858 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
TRIM13O60858 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
TRIM13O60858 EI24-204ENST00000527235 1625 ntTSL 5 BASIC22.32■■□□□ 1.16
TRIM13O60858 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC22.32■■□□□ 1.16
TRIM13O60858 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC22.32■■□□□ 1.16
TRIM13O60858 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms