Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
CACNA1AO00555 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
CACNA1AO00555 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CACNA1AO00555 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
CACNA1AO00555 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC22.04■■□□□ 1.12
CACNA1AO00555 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC22.04■■□□□ 1.12
CACNA1AO00555 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC22.04■■□□□ 1.12
CACNA1AO00555 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
CACNA1AO00555 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CACNA1AO00555 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CACNA1AO00555 AP005435.1-201ENST00000529293 1178 ntBASIC22.03■■□□□ 1.12
CACNA1AO00555 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC22.03■■□□□ 1.12
CACNA1AO00555 LINC02228-203ENST00000641970 1355 ntBASIC22.03■■□□□ 1.12
CACNA1AO00555 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC22.03■■□□□ 1.12
CACNA1AO00555 TPRG1LP1-201ENST00000598702 760 ntBASIC22.03■■□□□ 1.12
CACNA1AO00555 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC22.02■■□□□ 1.12
CACNA1AO00555 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
CACNA1AO00555 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC22.02■■□□□ 1.12
CACNA1AO00555 AC090877.2-201ENST00000558441 1738 ntBASIC22.02■■□□□ 1.12
CACNA1AO00555 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
CACNA1AO00555 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.11
CACNA1AO00555 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC22.02■■□□□ 1.11
CACNA1AO00555 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC22.02■■□□□ 1.11
CACNA1AO00555 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC22.02■■□□□ 1.11
CACNA1AO00555 ITM2C-210ENST00000620962 501 ntBASIC22.02■■□□□ 1.11
CACNA1AO00555 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC22.01■■□□□ 1.11
CACNA1AO00555 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC22.01■■□□□ 1.11
CACNA1AO00555 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC22.01■■□□□ 1.11
CACNA1AO00555 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CACNA1AO00555 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC22.01■■□□□ 1.11
CACNA1AO00555 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC22.01■■□□□ 1.11
CACNA1AO00555 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CACNA1AO00555 GALNS-213ENST00000569433 723 ntTSL 3 BASIC22.01■■□□□ 1.11
CACNA1AO00555 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC22.01■■□□□ 1.11
CACNA1AO00555 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CACNA1AO00555 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
CACNA1AO00555 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC22■■□□□ 1.11
CACNA1AO00555 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC22■■□□□ 1.11
CACNA1AO00555 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
CACNA1AO00555 POU5F1P3-201ENST00000428824 1078 ntBASIC22■■□□□ 1.11
CACNA1AO00555 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC22■■□□□ 1.11
CACNA1AO00555 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC22■■□□□ 1.11
CACNA1AO00555 MAX-217ENST00000557277 728 ntTSL 3 BASIC22■■□□□ 1.11
CACNA1AO00555 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC22■■□□□ 1.11
CACNA1AO00555 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CACNA1AO00555 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
CACNA1AO00555 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CACNA1AO00555 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CACNA1AO00555 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
CACNA1AO00555 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CACNA1AO00555 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
CACNA1AO00555 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CACNA1AO00555 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CACNA1AO00555 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CACNA1AO00555 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CACNA1AO00555 SMUG1P1-201ENST00000590640 811 ntBASIC21.98■■□□□ 1.11
CACNA1AO00555 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CACNA1AO00555 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC21.98■■□□□ 1.11
CACNA1AO00555 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
CACNA1AO00555 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
CACNA1AO00555 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
CACNA1AO00555 METTL26-203ENST00000397664 604 ntTSL 2 BASIC21.98■■□□□ 1.11
CACNA1AO00555 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
CACNA1AO00555 AL138781.1-201ENST00000566567 1274 ntBASIC21.97■■□□□ 1.11
CACNA1AO00555 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC21.97■■□□□ 1.11
CACNA1AO00555 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC21.97■■□□□ 1.11
CACNA1AO00555 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CACNA1AO00555 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
CACNA1AO00555 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CACNA1AO00555 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CACNA1AO00555 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC21.96■■□□□ 1.11
CACNA1AO00555 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC21.96■■□□□ 1.11
CACNA1AO00555 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CACNA1AO00555 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC21.96■■□□□ 1.11
CACNA1AO00555 MDK-213ENST00000617138 635 ntTSL 2 BASIC21.96■■□□□ 1.11
CACNA1AO00555 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CACNA1AO00555 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CACNA1AO00555 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC21.95■■□□□ 1.1
CACNA1AO00555 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CACNA1AO00555 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
CACNA1AO00555 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.95■■□□□ 1.1
CACNA1AO00555 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CACNA1AO00555 FOXO3B-201ENST00000395675 1928 ntBASIC21.95■■□□□ 1.1
CACNA1AO00555 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CACNA1AO00555 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC21.95■■□□□ 1.1
CACNA1AO00555 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC21.95■■□□□ 1.1
CACNA1AO00555 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC21.95■■□□□ 1.1
CACNA1AO00555 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CACNA1AO00555 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.94■■□□□ 1.1
CACNA1AO00555 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CACNA1AO00555 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC21.94■■□□□ 1.1
CACNA1AO00555 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CACNA1AO00555 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CACNA1AO00555 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC21.94■■□□□ 1.1
CACNA1AO00555 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC21.94■■□□□ 1.1
CACNA1AO00555 RPS2P52-201ENST00000469610 820 ntBASIC21.94■■□□□ 1.1
CACNA1AO00555 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC21.94■■□□□ 1.1
CACNA1AO00555 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.94■■□□□ 1.1
CACNA1AO00555 AC010331.1-201ENST00000611423 582 ntBASIC21.94■■□□□ 1.1
CACNA1AO00555 AL050303.2-201ENST00000619798 666 ntBASIC21.94■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms