Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC30.59■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC30.59■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC30.59■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC30.59■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC30.59■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC30.58■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 AF131216.4-201ENST00000638924 1588 ntBASIC30.58■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC30.57■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC30.57■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC30.57■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC30.57■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 ZNRF2P3-201ENST00000424200 374 ntBASIC30.57■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC30.57■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 PARL-206ENST00000435888 1098 ntTSL 5 BASIC30.56■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 SSSCA1-AS1-201ENST00000567594 614 ntBASIC30.56■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC30.56■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 AC131274.2-201ENST00000580697 1507 ntBASIC30.55■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC30.55■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC30.54■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC30.54■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC30.54■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC30.54■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 AC110285.6-201ENST00000617652 491 ntBASIC30.54■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC30.54■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC30.54■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC30.53■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC30.53■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC30.52■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC30.52■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC30.52■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC30.52■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC30.52■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC30.52■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 AC133561.1-201ENST00000568600 2415 ntBASIC30.52■■■□□ 2.48
SENP3-EIF4A1A0A087X0R7 KRT18P24-201ENST00000344739 1156 ntBASIC30.51■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC30.51■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC30.51■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC30.51■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC30.5■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC30.5■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC30.49■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC30.49■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 Z92544.1-202ENST00000571933 1220 ntBASIC30.49■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC30.49■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC30.49■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC30.48■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC30.48■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC30.48■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 ME2-208ENST00000638937 2471 ntTSL 5 BASIC30.48■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 AC022616.5-201ENST00000518796 181 ntBASIC30.48■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC30.48■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 AC011551.1-201ENST00000614101 683 ntBASIC30.48■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC30.48■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC30.47■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 AC141586.4-201ENST00000624558 1573 ntBASIC30.46■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC30.46■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC30.46■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC30.46■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms