Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CTDP1Q9Y5B0 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CTDP1Q9Y5B0 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
CTDP1Q9Y5B0 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 F10-203ENST00000409306 1450 ntTSL 3 BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 PLXNB1-201ENST00000296440 7143 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 HNRNPA1P27-201ENST00000412087 955 ntBASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 AC078875.1-201ENST00000431907 724 ntBASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 PTPA-215ENST00000432124 567 ntTSL 4 BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 AL596276.2-201ENST00000447525 331 ntBASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 MIR3907-201ENST00000579424 151 ntBASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 AC020922.3-201ENST00000595064 547 ntBASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 AC133540.1-201ENST00000620845 1019 ntBASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 AC144522.1-201ENST00000625111 1658 ntBASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 AL109954.1-202ENST00000564051 2148 ntBASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CTDP1Q9Y5B0 ACE3P-201ENST00000423435 1973 ntBASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 PFN2-206ENST00000461930 606 ntTSL 4 BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 IGLV3-15-201ENST00000518356 244 ntBASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 AC012044.1-201ENST00000603431 297 ntBASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 KRT8P21-201ENST00000430398 1491 ntBASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 NAPEPLD-201ENST00000341533 4972 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.98■□□□□ 0.31
CTDP1Q9Y5B0 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CTDP1Q9Y5B0 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC16.97■□□□□ 0.31
CTDP1Q9Y5B0 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.97■□□□□ 0.31
CTDP1Q9Y5B0 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms