Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 AC010319.3-201ENST00000597028 470 ntBASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 AC020910.6-201ENST00000623084 1459 ntBASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 TNN-203ENST00000622870 3719 ntTSL 5 BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 AC020910.5-201ENST00000623668 1865 ntBASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 AL359881.3-201ENST00000602640 1721 ntBASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 CNTNAP3P2-201ENST00000617175 3861 ntBASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 GSN-209ENST00000449733 2702 ntTSL 2 BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 AL590440.2-201ENST00000641973 1595 ntBASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 KHSRPP1-201ENST00000427983 1768 ntBASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 AP000593.2-201ENST00000542775 1433 ntBASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 AC012617.1-204ENST00000586340 2305 ntBASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 CRB3P1-201ENST00000449338 276 ntBASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 NEU3-203ENST00000529024 581 ntTSL 3 BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 FKBP4P6-201ENST00000457486 1332 ntBASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 AC011474.4-201ENST00000623523 2076 ntBASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
HIF3AQ9Y2N7 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 TCAM1P-207ENST00000485295 1537 ntBASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms