Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SCUBE3Q8IX30 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC15.51■□□□□ 0.07
SCUBE3Q8IX30 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC15.51■□□□□ 0.07
SCUBE3Q8IX30 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
SCUBE3Q8IX30 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
SCUBE3Q8IX30 OR2I1P-210ENST00000642037 4691 ntBASIC15.51■□□□□ 0.07
SCUBE3Q8IX30 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SCUBE3Q8IX30 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SCUBE3Q8IX30 TNN-203ENST00000622870 3719 ntTSL 5 BASIC15.51■□□□□ 0.07
SCUBE3Q8IX30 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC15.51■□□□□ 0.07
SCUBE3Q8IX30 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 KHSRPP1-201ENST00000427983 1768 ntBASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 MIR326-201ENST00000362220 95 ntBASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 AK6-201ENST00000380818 1183 ntTSL 2 BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 MIR1908-201ENST00000410394 80 ntBASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 AC079178.1-201ENST00000420915 656 ntBASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 GOLGA2P4-201ENST00000441462 777 ntBASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 Z93015.1-201ENST00000451718 390 ntBASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 IGHV3OR16-16-201ENST00000563644 343 ntBASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 DUX4L46-201ENST00000566845 751 ntBASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 AC215219.1-201ENST00000400706 1817 ntBASIC15.5■□□□□ 0.07
SCUBE3Q8IX30 AL590440.2-201ENST00000641973 1595 ntBASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 BX640514.1-201ENST00000583223 1918 ntBASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 OR5D16-201ENST00000378396 987 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 MIR4783-201ENST00000580343 82 ntBASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC15.49■□□□□ 0.07
SCUBE3Q8IX30 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms