Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LIG3P49916 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIG3P49916 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIG3P49916 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIG3P49916 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC15.62■□□□□ 0.09
LIG3P49916 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIG3P49916 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC15.62■□□□□ 0.09
LIG3P49916 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LIG3P49916 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIG3P49916 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.62■□□□□ 0.09
LIG3P49916 AMT-232ENST00000636199 1546 ntTSL 5 BASIC15.62■□□□□ 0.09
LIG3P49916 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIG3P49916 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC15.62■□□□□ 0.09
LIG3P49916 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC15.62■□□□□ 0.09
LIG3P49916 PSD-202ENST00000406432 3861 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIG3P49916 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC15.62■□□□□ 0.09
LIG3P49916 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIG3P49916 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LIG3P49916 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIG3P49916 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIG3P49916 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIG3P49916 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC15.61■□□□□ 0.09
LIG3P49916 TRIB1-201ENST00000311922 3635 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIG3P49916 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC15.61■□□□□ 0.09
LIG3P49916 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIG3P49916 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC15.61■□□□□ 0.09
LIG3P49916 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIG3P49916 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC15.61■□□□□ 0.09
LIG3P49916 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIG3P49916 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LIG3P49916 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC15.61■□□□□ 0.09
LIG3P49916 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
LIG3P49916 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC15.61■□□□□ 0.09
LIG3P49916 WBP2-203ENST00000433525 928 ntTSL 2 BASIC15.61■□□□□ 0.09
LIG3P49916 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC15.61■□□□□ 0.09
LIG3P49916 RN7SL837P-201ENST00000463010 287 ntBASIC15.61■□□□□ 0.09
LIG3P49916 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC15.61■□□□□ 0.09
LIG3P49916 HNRNPA1P13-201ENST00000510646 963 ntBASIC15.61■□□□□ 0.09
LIG3P49916 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LIG3P49916 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC15.61■□□□□ 0.09
LIG3P49916 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC15.61■□□□□ 0.09
LIG3P49916 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC15.61■□□□□ 0.09
LIG3P49916 AC015910.1-201ENST00000579400 975 ntBASIC15.61■□□□□ 0.09
LIG3P49916 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC15.61■□□□□ 0.09
LIG3P49916 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC15.61■□□□□ 0.09
LIG3P49916 AL049840.4-201ENST00000602422 811 ntBASIC15.61■□□□□ 0.09
LIG3P49916 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC15.61■□□□□ 0.09
LIG3P49916 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC15.61■□□□□ 0.09
LIG3P49916 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LIG3P49916 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIG3P49916 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIG3P49916 CPT1C-202ENST00000323446 2783 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIG3P49916 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LIG3P49916 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC15.61■□□□□ 0.09
LIG3P49916 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIG3P49916 TOMM40L-209ENST00000545897 2807 ntTSL 2 BASIC15.61■□□□□ 0.09
LIG3P49916 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIG3P49916 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIG3P49916 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIG3P49916 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIG3P49916 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
LIG3P49916 AL591122.2-201ENST00000624125 1853 ntBASIC15.61■□□□□ 0.09
LIG3P49916 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
LIG3P49916 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
LIG3P49916 GABPB1-201ENST00000220429 2726 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
LIG3P49916 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LIG3P49916 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
LIG3P49916 AL023775.1-201ENST00000454907 1746 ntBASIC15.6■□□□□ 0.09
LIG3P49916 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC15.6■□□□□ 0.09
LIG3P49916 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC15.6■□□□□ 0.09
LIG3P49916 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC15.6■□□□□ 0.09
LIG3P49916 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC15.6■□□□□ 0.09
LIG3P49916 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC15.6■□□□□ 0.09
LIG3P49916 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
LIG3P49916 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
LIG3P49916 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC15.6■□□□□ 0.09
LIG3P49916 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LIG3P49916 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
LIG3P49916 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
LIG3P49916 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
LIG3P49916 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LIG3P49916 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
LIG3P49916 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LIG3P49916 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LIG3P49916 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LIG3P49916 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.6■□□□□ 0.09
LIG3P49916 AC134915.1-201ENST00000426461 574 ntBASIC15.6■□□□□ 0.09
LIG3P49916 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
LIG3P49916 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC15.6■□□□□ 0.09
LIG3P49916 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC15.6■□□□□ 0.09
LIG3P49916 VDAC1P7-201ENST00000462417 847 ntBASIC15.6■□□□□ 0.09
LIG3P49916 RPL13AP25-201ENST00000484130 612 ntBASIC15.6■□□□□ 0.09
LIG3P49916 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC15.6■□□□□ 0.09
LIG3P49916 CFL1-212ENST00000531413 636 ntTSL 3 BASIC15.6■□□□□ 0.09
LIG3P49916 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
LIG3P49916 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC15.6■□□□□ 0.09
LIG3P49916 PAM16-204ENST00000571941 674 ntTSL 3 BASIC15.6■□□□□ 0.09
LIG3P49916 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC15.6■□□□□ 0.09
LIG3P49916 AC133539.2-201ENST00000604757 467 ntBASIC15.6■□□□□ 0.09
LIG3P49916 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms