Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
SOX2P48431 TNS2-203ENST00000379902 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
SOX2P48431 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SOX2P48431 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SOX2P48431 AL731571.1-201ENST00000617058 5428 ntBASIC13.04□□□□□ -0.32
SOX2P48431 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SOX2P48431 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SOX2P48431 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SOX2P48431 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SOX2P48431 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SOX2P48431 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC13.04□□□□□ -0.32
SOX2P48431 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
SOX2P48431 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SOX2P48431 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SOX2P48431 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SOX2P48431 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
SOX2P48431 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC13.04□□□□□ -0.32
SOX2P48431 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SOX2P48431 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
SOX2P48431 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SOX2P48431 GSN-209ENST00000449733 2702 ntTSL 2 BASIC13.04□□□□□ -0.32
SOX2P48431 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SOX2P48431 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC13.04□□□□□ -0.32
SOX2P48431 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC13.04□□□□□ -0.32
SOX2P48431 TREML5P-201ENST00000421694 576 ntBASIC13.04□□□□□ -0.32
SOX2P48431 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC13.04□□□□□ -0.32
SOX2P48431 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC13.04□□□□□ -0.32
SOX2P48431 AP006288.1-201ENST00000446065 395 ntBASIC13.04□□□□□ -0.32
SOX2P48431 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SOX2P48431 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC13.04□□□□□ -0.32
SOX2P48431 VDAC1P7-201ENST00000462417 847 ntBASIC13.04□□□□□ -0.32
SOX2P48431 SPDYE18-201ENST00000510091 1050 ntBASIC13.04□□□□□ -0.32
SOX2P48431 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
SOX2P48431 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC13.04□□□□□ -0.32
SOX2P48431 ZNF890P-202ENST00000530367 1156 ntBASIC13.04□□□□□ -0.32
SOX2P48431 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC13.04□□□□□ -0.32
SOX2P48431 AC036164.1-201ENST00000570544 333 ntBASIC13.04□□□□□ -0.32
SOX2P48431 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC13.04□□□□□ -0.32
SOX2P48431 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
SOX2P48431 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC13.04□□□□□ -0.32
SOX2P48431 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SOX2P48431 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
SOX2P48431 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC13.04□□□□□ -0.32
SOX2P48431 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC13.04□□□□□ -0.32
SOX2P48431 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC13.04□□□□□ -0.32
SOX2P48431 PTK2-202ENST00000395218 4415 ntTSL 5 BASIC13.04□□□□□ -0.32
SOX2P48431 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SOX2P48431 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
SOX2P48431 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SOX2P48431 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
SOX2P48431 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SOX2P48431 CRY2-202ENST00000443527 4203 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
SOX2P48431 MIR497HG-202ENST00000572453 3838 ntBASIC13.04□□□□□ -0.32
SOX2P48431 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SOX2P48431 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
SOX2P48431 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SOX2P48431 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
SOX2P48431 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SOX2P48431 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC13.04□□□□□ -0.32
SOX2P48431 AC020910.6-201ENST00000623084 1459 ntBASIC13.04□□□□□ -0.32
SOX2P48431 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SOX2P48431 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SOX2P48431 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SOX2P48431 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SOX2P48431 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SOX2P48431 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC13.03□□□□□ -0.32
SOX2P48431 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SOX2P48431 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SOX2P48431 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SOX2P48431 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SOX2P48431 AC092053.3-201ENST00000641308 4975 ntBASIC13.03□□□□□ -0.32
SOX2P48431 GPRC5A-201ENST00000014914 7362 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SOX2P48431 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SOX2P48431 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
SOX2P48431 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SOX2P48431 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
SOX2P48431 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
SOX2P48431 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
SOX2P48431 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC13.03□□□□□ -0.32
SOX2P48431 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC13.03□□□□□ -0.32
SOX2P48431 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SOX2P48431 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
SOX2P48431 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
SOX2P48431 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SOX2P48431 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SOX2P48431 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
SOX2P48431 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SOX2P48431 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SOX2P48431 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC13.03□□□□□ -0.32
SOX2P48431 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
SOX2P48431 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SOX2P48431 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC13.03□□□□□ -0.32
SOX2P48431 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SOX2P48431 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC13.03□□□□□ -0.32
SOX2P48431 AC097493.3-201ENST00000509725 367 ntBASIC13.03□□□□□ -0.32
SOX2P48431 AC026410.3-201ENST00000514280 936 ntBASIC13.03□□□□□ -0.32
SOX2P48431 IGHV3-42-201ENST00000520410 361 ntBASIC13.03□□□□□ -0.32
SOX2P48431 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SOX2P48431 AC025678.2-201ENST00000562061 970 ntBASIC13.03□□□□□ -0.32
SOX2P48431 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC13.03□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms