Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC15.26■□□□□ 0.03
PTPN9P43378 HSPB1P2-201ENST00000448722 546 ntBASIC15.26■□□□□ 0.03
PTPN9P43378 BNIP3P42-201ENST00000454982 569 ntBASIC15.26■□□□□ 0.03
PTPN9P43378 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC15.26■□□□□ 0.03
PTPN9P43378 HNRNPA1P36-201ENST00000521313 955 ntBASIC15.26■□□□□ 0.03
PTPN9P43378 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC15.26■□□□□ 0.03
PTPN9P43378 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC15.26■□□□□ 0.03
PTPN9P43378 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
PTPN9P43378 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC15.26■□□□□ 0.03
PTPN9P43378 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC15.26■□□□□ 0.03
PTPN9P43378 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC15.26■□□□□ 0.03
PTPN9P43378 BNIP3P29-201ENST00000598302 571 ntBASIC15.26■□□□□ 0.03
PTPN9P43378 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
PTPN9P43378 AC104506.1-201ENST00000609247 429 ntBASIC15.26■□□□□ 0.03
PTPN9P43378 AC011447.5-201ENST00000616168 564 ntBASIC15.26■□□□□ 0.03
PTPN9P43378 AL162426.1-201ENST00000624141 743 ntBASIC15.26■□□□□ 0.03
PTPN9P43378 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN9P43378 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN9P43378 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC15.26■□□□□ 0.03
PTPN9P43378 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN9P43378 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC15.26■□□□□ 0.03
PTPN9P43378 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN9P43378 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN9P43378 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN9P43378 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
PTPN9P43378 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN9P43378 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN9P43378 OS9-204ENST00000389146 2091 ntTSL 2 BASIC15.26■□□□□ 0.03
PTPN9P43378 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC15.26■□□□□ 0.03
PTPN9P43378 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
PTPN9P43378 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN9P43378 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN9P43378 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
PTPN9P43378 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN9P43378 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN9P43378 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN9P43378 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
PTPN9P43378 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC15.25■□□□□ 0.03
PTPN9P43378 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN9P43378 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN9P43378 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN9P43378 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN9P43378 GK-202ENST00000378941 458 ntTSL 3 BASIC15.25■□□□□ 0.03
PTPN9P43378 NDUFAB1P1-201ENST00000404262 460 ntBASIC15.25■□□□□ 0.03
PTPN9P43378 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN9P43378 Z93015.1-201ENST00000451718 390 ntBASIC15.25■□□□□ 0.03
PTPN9P43378 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN9P43378 AC009542.2-202ENST00000619004 1067 ntBASIC15.25■□□□□ 0.03
PTPN9P43378 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN9P43378 AC016397.2-201ENST00000624848 1985 ntBASIC15.25■□□□□ 0.03
PTPN9P43378 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC15.25■□□□□ 0.03
PTPN9P43378 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
PTPN9P43378 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN9P43378 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN9P43378 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
PTPN9P43378 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN9P43378 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
PTPN9P43378 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC15.24■□□□□ 0.03
PTPN9P43378 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN9P43378 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN9P43378 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN9P43378 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC15.24■□□□□ 0.03
PTPN9P43378 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN9P43378 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
PTPN9P43378 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN9P43378 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC15.24■□□□□ 0.03
PTPN9P43378 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC15.24■□□□□ 0.03
PTPN9P43378 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC15.24■□□□□ 0.03
PTPN9P43378 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.24■□□□□ 0.03
PTPN9P43378 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN9P43378 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
PTPN9P43378 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN9P43378 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN9P43378 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN9P43378 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN9P43378 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
PTPN9P43378 AMT-239ENST00000636865 1914 ntTSL 5 BASIC15.24■□□□□ 0.03
PTPN9P43378 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
PTPN9P43378 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN9P43378 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
PTPN9P43378 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN9P43378 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
PTPN9P43378 RPSAP36-202ENST00000494591 1261 ntBASIC15.24■□□□□ 0.03
PTPN9P43378 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN9P43378 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN9P43378 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC15.24■□□□□ 0.03
PTPN9P43378 AC100827.2-201ENST00000563214 1194 ntBASIC15.24■□□□□ 0.03
PTPN9P43378 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
PTPN9P43378 KLK11-210ENST00000600362 759 ntTSL 3 BASIC15.24■□□□□ 0.03
PTPN9P43378 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
PTPN9P43378 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC15.24■□□□□ 0.03
PTPN9P43378 Z98259.2-201ENST00000641583 609 ntBASIC15.24■□□□□ 0.03
PTPN9P43378 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC15.24■□□□□ 0.03
PTPN9P43378 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
PTPN9P43378 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN9P43378 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN9P43378 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN9P43378 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
PTPN9P43378 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN9P43378 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms