Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC15.01□□□□□ -0.01
COL9A1P20849 AC012441.2-201ENST00000444843 739 ntBASIC15.01□□□□□ -0.01
COL9A1P20849 AL353653.1-201ENST00000452336 638 ntTSL 2 BASIC15.01□□□□□ -0.01
COL9A1P20849 HGNC:18790-207ENST00000505246 973 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
COL9A1P20849 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC15.01□□□□□ -0.01
COL9A1P20849 NOVA1-209ENST00000547619 947 ntTSL 3 BASIC15.01□□□□□ -0.01
COL9A1P20849 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC15.01□□□□□ -0.01
COL9A1P20849 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC15.01□□□□□ -0.01
COL9A1P20849 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC15.01□□□□□ -0.01
COL9A1P20849 AC005962.1-201ENST00000584100 773 ntBASIC15.01□□□□□ -0.01
COL9A1P20849 KLKP1-202ENST00000597246 1125 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL9A1P20849 AL513478.2-202ENST00000621949 835 ntTSL 3 BASIC15.01□□□□□ -0.01
COL9A1P20849 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL9A1P20849 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL9A1P20849 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC15.01□□□□□ -0.01
COL9A1P20849 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL9A1P20849 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL9A1P20849 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL9A1P20849 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
COL9A1P20849 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL9A1P20849 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
COL9A1P20849 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC15.01□□□□□ -0.01
COL9A1P20849 C18orf15-201ENST00000623680 2534 ntBASIC15.01□□□□□ -0.01
COL9A1P20849 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL9A1P20849 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC15.01□□□□□ -0.01
COL9A1P20849 AC008894.3-201ENST00000624324 3103 ntBASIC15.01□□□□□ -0.01
COL9A1P20849 AC023090.2-201ENST00000625182 2110 ntBASIC15.01□□□□□ -0.01
COL9A1P20849 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL9A1P20849 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC15.01□□□□□ -0.01
COL9A1P20849 REXO1L2P-201ENST00000425429 2069 ntBASIC15.01□□□□□ -0.01
COL9A1P20849 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL9A1P20849 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL9A1P20849 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
COL9A1P20849 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
COL9A1P20849 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL9A1P20849 LYRM1-202ENST00000396052 1659 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL9A1P20849 AC023024.2-201ENST00000623561 1993 ntBASIC15□□□□□ -0.01
COL9A1P20849 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL9A1P20849 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
COL9A1P20849 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL9A1P20849 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC15□□□□□ -0.01
COL9A1P20849 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
COL9A1P20849 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
COL9A1P20849 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC15□□□□□ -0.01
COL9A1P20849 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL9A1P20849 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
COL9A1P20849 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
COL9A1P20849 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC15□□□□□ -0.01
COL9A1P20849 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
COL9A1P20849 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
COL9A1P20849 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
COL9A1P20849 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC15□□□□□ -0.01
COL9A1P20849 AC092570.1-201ENST00000414446 469 ntBASIC15□□□□□ -0.01
COL9A1P20849 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL9A1P20849 LINC01821-202ENST00000438505 882 ntTSL 4 BASIC15□□□□□ -0.01
COL9A1P20849 AL110503.1-201ENST00000457224 534 ntTSL 3 BASIC15□□□□□ -0.01
COL9A1P20849 TAC3-209ENST00000458521 816 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL9A1P20849 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC15□□□□□ -0.01
COL9A1P20849 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
COL9A1P20849 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
COL9A1P20849 ACTBP9-201ENST00000587663 1099 ntBASIC15□□□□□ -0.01
COL9A1P20849 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC15□□□□□ -0.01
COL9A1P20849 AC024933.1-201ENST00000608472 348 ntBASIC15□□□□□ -0.01
COL9A1P20849 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
COL9A1P20849 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC15□□□□□ -0.01
COL9A1P20849 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC15□□□□□ -0.01
COL9A1P20849 Z98259.2-201ENST00000641583 609 ntBASIC15□□□□□ -0.01
COL9A1P20849 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
COL9A1P20849 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
COL9A1P20849 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC15□□□□□ -0.01
COL9A1P20849 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL9A1P20849 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC15□□□□□ -0.01
COL9A1P20849 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
COL9A1P20849 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC15□□□□□ -0.01
COL9A1P20849 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL9A1P20849 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL9A1P20849 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
COL9A1P20849 ZNF143-202ENST00000396597 1954 ntTSL 2 BASIC15□□□□□ -0.01
COL9A1P20849 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
COL9A1P20849 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL9A1P20849 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL9A1P20849 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL9A1P20849 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL9A1P20849 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL9A1P20849 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL9A1P20849 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL9A1P20849 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL9A1P20849 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC14.99□□□□□ -0.01
COL9A1P20849 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC14.99□□□□□ -0.01
COL9A1P20849 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC14.99□□□□□ -0.01
COL9A1P20849 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL9A1P20849 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC14.99□□□□□ -0.01
COL9A1P20849 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL9A1P20849 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL9A1P20849 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL9A1P20849 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL9A1P20849 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL9A1P20849 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC14.99□□□□□ -0.01
COL9A1P20849 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL9A1P20849 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC14.99□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms